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SMTL ID : 2jh0.1

Human Thrombin Hirugen Inhibitor complex.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-oligomer

Ligands

1 x 701: (2R)-2-(5-CHLORO-2-THIENYL)-N-{(3S)-1-[(1S)-1-METHYL-2-MORPHOLIN-4-YL-2-OXOETHYL]-2-OXOPYRROLIDIN-3-YL}PROPENE-1-SULFONAMIDE(Non-covalent)

701.1:

16 residues within 4Å:

Chain B: H.43, Y.47, W.50, L.96, D.199, A.200, C.201, E.202, V.225, W.227, G.228, G.230, C.231, G.238, F.239, Y.240

7 PLIP interactions:

7 interactions with chain B

Hydrophobic interactions: B:A.200, B:W.227
Hydrogen bonds: B:E.202, B:G.228, B:G.230
Water bridges: B:Y.47, B:K.52

1 x CA: CALCIUM ION(Non-covalent)

CA.2:

2 residues within 4Å:

Chain B: K.174, T.177

4 PLIP interactions:

2 interactions with chain B, 2 Ligand-Water interactions

Metal complexes: B:K.174, B:T.177, H₂O.148, H₂O.153

1 x NA: SODIUM ION(Non-functional Binders)

NA.3:

3 residues within 4Å:

Chain B: D.232, R.233, K.236

5 PLIP interactions:

5 interactions with chain B

Hydrogen bonds: B:K.236
Water bridges: B:D.199, B:D.234, B:K.236, B:G.238

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Senger, S. et al., Sulfonamide-Related Conformational Effects and Their Importance in Structure-Based Design. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-05-08

Peptides

THROMBIN LIGHT CHAIN: A
THROMBIN HEAVY CHAIN: B
HIRUDIN IIIA: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

THROMBIN LIGHT CHAIN

THROMBIN HEAVY CHAIN

HIRUDIN IIIA

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1a2c.1 | 1a3b.1 | 1a3e.1 | 1a46.1 | 1a4w.1 | 1a5g.1 | 1a61.1 | 1abi.1 | 1abj.1 | 1ad8.1 | 1ae8.1 | 1afe.1 | 1aht.1 | 1ai8.1 | 1aix.1 | 1awf.1 | 1awh.1 | 1awh.2 | 1ay6.1 | 1b5g.1 | 1b7x.1 | 1ba8.1 | 1bb0.1 | 1bcu.1 | 1bmm.1 | 1bmn.1 | 1bth.1 | 1bth.2 | 1c1u.1 | 1c1v.1 more...less...

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