SMTL ID : 8kme.1

CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN INHIBITED WITH SEL2770.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ACE- 0BN- CHG- MLY- LEU- PRO- NH2: SEL2770(Non-covalent)

ACE-0BN-CHG-MLY-LEU-PRO-NH2.1: 15 residues within 4Å: Chain B: H.43, Y.47, W.50, L.96, I.179, D.199, A.200, E.202, S.226, W.227, G.228, E.229, G.230, C.231, G.238 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:W.50, B:I.179, B:W.227, B:W.227, B:E.229 Hydrogen bonds: B:D.199, B:D.199, B:A.200, B:G.228, B:G.228, B:E.229, B:G.230 Water bridges: B:F.239

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain B: K.174, D.175, T.177 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.177 NA.3: 4 residues within 4Å: Chain B: Y.190, R.233, G.235, K.236 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.235, B:K.236, B:K.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mochalkin, I. et al., Structures of thrombin retro-inhibited with SEL2711 and SEL2770 as they relate to factor Xa binding. Acta Crystallogr.,Sect.D (1999)

Release Date

1999-03-24

Peptides

THROMBIN: A
THROMBIN: B
N-ACETYLHIRUDIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

THROMBIN

THROMBIN

N-ACETYLHIRUDIN

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