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SMTL ID : 7kme.1

CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN INHIBITED WITH SEL2711.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ACE- 0BN- CHG- PRR: SEL2711(Non-covalent)

ACE-0BN-CHG-PRR.1:

19 residues within 4Å:

Chain B: H.43, W.50, E.94, L.96, E.146, I.179, D.199, A.200, C.201, E.202, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231, G.238

12 PLIP interactions:

12 interactions with chain B

Hydrophobic interactions: B:L.96, B:E.146, B:V.225, B:W.227
Hydrogen bonds: B:D.199, B:D.199, B:G.228, B:G.228, B:G.230
Water bridges: B:S.205, B:S.205, B:F.239

2 x NA: SODIUM ION(Non-functional Binders)

NA.2:	2 residues within 4Å: Chain B: K.174, T.177 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.177
NA.3:	2 residues within 4Å: Chain B: R.233, K.236 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:R.197, B:G.198

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Mochalkin, I. et al., Structures of thrombin retro-inhibited with SEL2711 and SEL2770 as they relate to factor Xa binding. Acta Crystallogr.,Sect.D (1999)

Release Date

1999-03-09

Peptides

THROMBIN L-CHAIN: A
THROMBIN H-CHAIN: B
HIRUGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

THROMBIN L-CHAIN

THROMBIN H-CHAIN

HIRUGEN

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