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SMTL ID : 1uma.1

ALPHA-THROMBIN (HIRUGEN) COMPLEXED WITH NA-(N,N-DIMETHYLCARBAMOYL)-ALPHA-AZALYSINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1:

2 residues within 4Å:

Chain B: L.46, N.53

1 PLIP interactions:

1 interactions with chain B

Hydrogen bonds: B:T.55

2 x IN2: N,N-DIMETHYLCARBAMOYL-ALPHA-AZALYSINE(Non-covalent)(Covalent)

IN2.2:	6 residues within 4Å: Chain B: H.43, Y.47, K.52, I.179, W.227 Ligands: IN2.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.47 Hydrogen bonds: B:K.52 Water bridges: B:K.52, B:G.228
IN2.3:	11 residues within 4Å: Chain B: H.43, W.50, D.199, A.200, C.201, E.202, S.205, G.228, G.230, C.231 Ligands: IN2.2 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.200 Water bridges: B:A.200, B:G.203, B:S.205, B:G.228, B:E.229

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Nardini, M. et al., Human alpha-thrombin inhibition by the active site titrant N alpha-(N,N-dimethylcarbamoyl)-alpha-azalysine p-nitrophenyl ester: a comparative kinetic and X-ray crystallographic study. J.Mol.Biol. (1996)

Release Date

1996-11-08

Peptides

ALPHA-THROMBIN: A
ALPHA-THROMBIN: B
HIRUDIN I: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ALPHA-THROMBIN

ALPHA-THROMBIN

HIRUDIN I

Related Entries With Identical Sequence

1a2c.1 | 1a3b.1 | 1a3e.1 | 1a46.1 | 1a4w.1 | 1a5g.1 | 1a61.1 | 1abi.1 | 1abj.1 | 1ad8.1 | 1ae8.1 | 1afe.1 | 1aht.1 | 1ai8.1 | 1aix.1 | 1awf.1 | 1awh.1 | 1awh.2 | 1ay6.1 | 1b5g.1 | 1b7x.1 | 1ba8.1 | 1bb0.1 | 1bcu.1 | 1bmm.1 | 1bmn.1 | 1bth.1 | 1bth.2 | 1c1u.1 | 1c1v.1 more...less...

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