SMTL ID : 2jh5.1

Human Thrombin Hirugen Inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain B: K.174, T.177 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:K.174, B:T.177

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain B: Y.190, R.233, K.236 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.233 Water bridges: B:Y.190, B:D.234, B:K.236, B:G.238

1 x 895: 2-(5-CHLORO-2-THIENYL)-N-{(3S)-1-[(1S)-1-METHYL-2-MORPHOLIN-4-YL-2-OXOETHYL]-2-OXOPYRROLIDIN-3-YL}ETHENESULFONAMIDE(Non-covalent)

895.3: 16 residues within 4Å: Chain B: H.43, Y.47, W.50, L.96, D.199, A.200, C.201, E.202, V.225, W.227, G.228, G.230, C.231, G.238, F.239, Y.240 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.200 Hydrogen bonds: B:E.202, B:G.228, B:G.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Senger, S. et al., Sulfonamide-Related Conformational Effects and Their Importance in Structure-Based Design. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-05-08

Peptides

THROMBIN LIGHT CHAIN: A
THROMBIN HEAVY CHAIN: B
HIRUDIN IIIA: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
H

THROMBIN LIGHT CHAIN

THROMBIN HEAVY CHAIN

HIRUDIN IIIA

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