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SMTL ID : 1kx3.1

X-Ray Structure of the Nucleosome Core Particle, NCP146, at 2.0 A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

13 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)

MN.1:	2 residues within 4Å: Chain A: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.2:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MN.3:	1 residues within 4Å: Chain A: G.121 No protein-ligand interaction detected (PLIP)
MN.4:	2 residues within 4Å: Chain A: A.133, G.134 No protein-ligand interaction detected (PLIP)
MN.5:	1 residues within 4Å: Chain A: G.100 No protein-ligand interaction detected (PLIP)
MN.6:	1 residues within 4Å: Chain A: G.138 No protein-ligand interaction detected (PLIP)
MN.7:	1 residues within 4Å: Chain B: G.134 No protein-ligand interaction detected (PLIP)
MN.8:	1 residues within 4Å: Chain B: G.100 No protein-ligand interaction detected (PLIP)
MN.9:	2 residues within 4Å: Chain B: T.70, G.71 No protein-ligand interaction detected (PLIP)
MN.10:	2 residues within 4Å: Chain B: G.121, G.122 No protein-ligand interaction detected (PLIP)
MN.11:	2 residues within 4Å: Chain B: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.12:	1 residues within 4Å: Chain B: G.81 No protein-ligand interaction detected (PLIP)
MN.13:	1 residues within 4Å: Chain G: D.77 5 PLIP interactions: 1 interactions with chain G, 4 Ligand-Water interactions Metal complexes: G:D.77, H₂O.25, H₂O.26, H₂O.27, H₂O.30

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Davey, C.A. et al., Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 A Resolution. J.Mol.Biol. (2002)

Release Date

2002-12-25

Peptides

histone H3: CG
histone H4: DH
histone H2A.1: EI
histone H2B.2: FJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

D
B

H
F

E
C

I
G

F
D

J
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

histone H3

Toggle Identical (CG)

histone H4

histone H2A.1

histone H2B.2

Toggle Identical (FJ)

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