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SMTL ID : 1kx4.1

X-Ray Structure of the Nucleosome Core Particle, NCP146b, at 2.6 A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

6 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)

MN.1:	1 residues within 4Å: Chain A: G.20 No protein-ligand interaction detected (PLIP)
MN.2:	2 residues within 4Å: Chain A: G.141, G.142 No protein-ligand interaction detected (PLIP)
MN.3:	1 residues within 4Å: Chain A: G.100 No protein-ligand interaction detected (PLIP)
MN.4:	1 residues within 4Å: Chain A: G.59 No protein-ligand interaction detected (PLIP)
MN.5:	1 residues within 4Å: Chain B: T.140 No protein-ligand interaction detected (PLIP)
MN.6:	1 residues within 4Å: Chain C: D.77 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.77, H₂O.7, H₂O.7

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.7:	2 residues within 4Å: Chain C: P.121, K.122 Ligand excluded by PLIP
CL.8:	5 residues within 4Å: Chain E: A.45, G.46, A.47 Chain F: T.90, S.91 Ligand excluded by PLIP
CL.9:	2 residues within 4Å: Chain G: P.121, K.122 Ligand excluded by PLIP
CL.10:	6 residues within 4Å: Chain I: G.44, A.45, G.46, A.47 Chain J: T.90, S.91 Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Davey, C.A. et al., Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 A Resolution. J.Mol.Biol. (2002)

Release Date

2002-12-25

Peptides

histone H3: CG
histone H4: DH
histone H2A.1: EI
histone H2B.2: FJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

D
B

H
F

E
C

I
G

F
D

J
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

histone H3

histone H4

histone H2A.1

histone H2B.2

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