SMTL ID : 1kx5.1

X-Ray Structure of the Nucleosome Core Particle, NCP147, at 1.9 A Resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-oligomer

Ligands

14 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)

MN.1: 2 residues within 4Å: Chain B: A.134, G.135 No protein-ligand interaction detected (PLIP) MN.2: 1 residues within 4Å: Chain G: D.77 5 PLIP interactions: 1 interactions with chain G, 4 Ligand-Water interactions Metal complexes: G:D.77, H2O.805, H2O.824, H2O.835, H2O.1031 MN.3: 1 residues within 4Å: Chain B: G.101 No protein-ligand interaction detected (PLIP) MN.4: 1 residues within 4Å: Chain B: G.71 No protein-ligand interaction detected (PLIP) MN.5: 1 residues within 4Å: Chain B: G.122 No protein-ligand interaction detected (PLIP) MN.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MN.7: 1 residues within 4Å: Chain A: G.122 No protein-ligand interaction detected (PLIP) MN.8: 1 residues within 4Å: Chain A: G.135 No protein-ligand interaction detected (PLIP) MN.9: 2 residues within 4Å: Chain B: G.39, G.40 No protein-ligand interaction detected (PLIP) MN.10: 1 residues within 4Å: Chain A: G.101 No protein-ligand interaction detected (PLIP) MN.11: 2 residues within 4Å: Chain A: G.79 Chain B: C.69 No protein-ligand interaction detected (PLIP) MN.12: 2 residues within 4Å: Chain A: G.71, G.72 No protein-ligand interaction detected (PLIP) MN.13: 2 residues within 4Å: Chain A: G.39, G.40 No protein-ligand interaction detected (PLIP) MN.14: 1 residues within 4Å: Chain B: G.79 No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.15: 6 residues within 4Å: Chain I: G.44, A.45, G.46, A.47 Chain J: T.90, S.91 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain E: G.44, A.45, G.46, A.47 Chain F: T.90, S.91 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain C: M.120, P.121, K.122 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain G: M.120, P.121, K.122 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Davey, C.A. et al., Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 A Resolution. J.Mol.Biol. (2002)

Release Date

2002-12-25

Peptides

histone H3: CG
histone H4: DH
histone H2A.1: EI
histone H2B.2: FJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

D
B

H
F

E
C

I
G

F
D

J
H

histone H3

histone H4

histone H2A.1

histone H2B.2

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