SMTL ID : 1uz9.1

Crystallographic and solution studies of N-lithocholyl insulin: a new generation of prolonged-acting insulins.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-6-6-mer

Ligands

6 x CRS: M-CRESOL(Non-covalent)

CRS.1: 8 residues within 4Å: Chain A: C.6, I.10, C.11, L.16 Chain B: C.7, L.11, A.14 Chain D: H.5 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.16, B:L.11, B:A.14 Hydrogen bonds: A:C.11 CRS.5: 8 residues within 4Å: Chain C: C.6, I.10, C.11, L.16 Chain D: C.7, L.11, A.14 Chain F: H.5 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:L.11, D:A.14, C:L.16 Hydrogen bonds: C:C.11 CRS.9: 8 residues within 4Å: Chain B: H.5 Chain E: C.6, I.10, C.11, L.16 Chain F: C.7, L.11, A.14 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: E:L.16, F:L.11, F:A.14 Hydrogen bonds: E:C.11 CRS.13: 8 residues within 4Å: Chain G: C.6, I.10, C.11, L.16 Chain H: C.7, L.11, A.14 Chain J: H.5 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain H Hydrophobic interactions: G:L.16, H:L.11, H:A.14 Hydrogen bonds: G:C.11 CRS.17: 8 residues within 4Å: Chain I: C.6, I.10, C.11, L.16 Chain J: C.7, L.11, A.14 Chain L: H.5 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain I Hydrophobic interactions: J:L.11, J:A.14, I:L.16 Hydrogen bonds: I:C.11 CRS.21: 8 residues within 4Å: Chain H: H.5 Chain K: C.6, I.10, C.11, L.16 Chain L: C.7, L.11, A.14 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain K Hydrophobic interactions: L:L.11, L:A.14, K:L.16 Hydrogen bonds: K:C.11

6 x UZ9: (2S)-2-AMINO-6-({(4R)-4-[(10R,13S)-10,13-DIMETHYL-3-OXOHEXADECAHYDRO-1H-CYCLOPENTA[A]PHENANTHREN-17-YL]PENTANOYL}AMINO)HEXANOIC ACID(Covalent)

UZ9.2: 3 residues within 4Å: Chain A: G.1 Chain B: T.27, P.28 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.27 Water bridges: A:G.1, A:G.1, A:G.1 UZ9.6: 3 residues within 4Å: Chain C: G.1 Chain D: T.27, P.28 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Water bridges: C:G.1, C:G.1, C:G.1 Hydrogen bonds: D:T.27 UZ9.10: 3 residues within 4Å: Chain E: G.1 Chain F: T.27, P.28 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain E Hydrogen bonds: F:T.27 Water bridges: E:G.1, E:G.1, E:G.1 UZ9.14: 3 residues within 4Å: Chain G: G.1 Chain H: T.27, P.28 4 PLIP interactions: 1 interactions with chain H, 3 interactions with chain G Hydrogen bonds: H:T.27 Water bridges: G:G.1, G:G.1, G:G.1 UZ9.18: 3 residues within 4Å: Chain I: G.1 Chain J: T.27, P.28 4 PLIP interactions: 1 interactions with chain J, 3 interactions with chain I Hydrogen bonds: J:T.27 Water bridges: I:G.1, I:G.1, I:G.1 UZ9.22: 3 residues within 4Å: Chain K: G.1 Chain L: T.27, P.28 4 PLIP interactions: 3 interactions with chain K, 1 interactions with chain L Water bridges: K:G.1, K:G.1, K:G.1 Hydrogen bonds: L:T.27

6 x ZN: ZINC ION(Non-covalent)

ZN.3: 8 residues within 4Å: Chain B: H.10 Chain D: H.10 Chain F: H.10 Ligands: CL.4, ZN.7, CL.8, ZN.11, CL.12 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 1 interactions with chain B Metal complexes: F:H.10, D:H.10, B:H.10 ZN.7: 8 residues within 4Å: Chain B: H.10 Chain D: H.10 Chain F: H.10 Ligands: ZN.3, CL.4, CL.8, ZN.11, CL.12 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 1 interactions with chain B Metal complexes: F:H.10, D:H.10, B:H.10 ZN.11: 8 residues within 4Å: Chain B: H.10 Chain D: H.10 Chain F: H.10 Ligands: ZN.3, CL.4, ZN.7, CL.8, CL.12 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 1 interactions with chain B Metal complexes: F:H.10, D:H.10, B:H.10 ZN.15: 8 residues within 4Å: Chain H: H.10 Chain J: H.10 Chain L: H.10 Ligands: CL.16, ZN.19, CL.20, ZN.23, CL.24 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain H, 1 interactions with chain L Metal complexes: J:H.10, H:H.10, L:H.10 ZN.19: 8 residues within 4Å: Chain H: H.10 Chain J: H.10 Chain L: H.10 Ligands: ZN.15, CL.16, CL.20, ZN.23, CL.24 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain H, 1 interactions with chain L Metal complexes: J:H.10, H:H.10, L:H.10 ZN.23: 8 residues within 4Å: Chain H: H.10 Chain J: H.10 Chain L: H.10 Ligands: ZN.15, CL.16, ZN.19, CL.20, CL.24 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain H, 1 interactions with chain L Metal complexes: J:H.10, H:H.10, L:H.10

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.3, ZN.7, CL.8, ZN.11, CL.12 Ligand excluded by PLIP CL.8: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.3, CL.4, ZN.7, ZN.11, CL.12 Ligand excluded by PLIP CL.12: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.3, CL.4, ZN.7, CL.8, ZN.11 Ligand excluded by PLIP CL.16: 11 residues within 4Å: Chain H: L.6, H.10 Chain J: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.15, ZN.19, CL.20, ZN.23, CL.24 Ligand excluded by PLIP CL.20: 11 residues within 4Å: Chain H: L.6, H.10 Chain J: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.15, CL.16, ZN.19, ZN.23, CL.24 Ligand excluded by PLIP CL.24: 11 residues within 4Å: Chain H: L.6, H.10 Chain J: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.15, CL.16, ZN.19, CL.20, ZN.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whittingham, J.L. et al., Crystallographic and Solution Studies of N-Lithocholyl Insulin: A New Generation of Prolonged-Acting Human Insulins. Biochemistry (2004)

Release Date

2005-03-03

Peptides

INSULIN: ACEGIK
INSULIN: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

B
B

D
B

F
B

H
B

J
B

L
B

INSULIN

INSULIN

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