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SMTL ID : 9ibb.1

Rhombohedral crystalline form of human insulin complexed with m-cresol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CRS: M-CRESOL(Non-covalent)

CRS.1:	10 residues within 4Å: Chain A: C.6, C.7, S.9, I.10, C.11, L.16 Chain B: C.7, H.10, L.11, A.14 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.16, B:L.11 Hydrogen bonds: A:C.6, A:C.11
CRS.4:	11 residues within 4Å: Chain C: C.6, C.7, S.9, I.10, C.11, L.13, L.16 Chain D: C.7, H.10, L.11, A.14 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:L.16, D:L.11, D:A.14 Hydrogen bonds: C:C.6, C:C.11

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2:

3 residues within 4Å:

Chain B: L.6, H.10
Ligands: ZN.3

No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.3:	2 residues within 4Å: Chain B: H.10 Ligands: SCN.2 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.10
ZN.6:	2 residues within 4Å: Chain D: L.6, H.10 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.10, H₂O.2

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5:

4 residues within 4Å:

Chain C: L.13, Y.14, E.17
Chain D: V.18

2 PLIP interactions:

2 interactions with chain C

Hydrogen bonds: C:Y.14, C:E.17

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kontarinis, A. et al., Exploring humidity effects on polycrystalline human insulin ligand complexes:preliminary crystallographic insights. J.Appl.Crystallogr. (2025)

Release Date

2025-10-29

Peptides

Insulin A chain: AC
Insulin B chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Insulin A chain

Toggle Identical (AC)

Insulin B chain

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