SMTL ID : 7d5w.1

Bovine heart cytochrome c oxidase in a catalytic intermediate of O at 1.84 angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

4 x HEA: HEME-A(Non-covalent)

HEA.1: 35 residues within 4Å: Chain A: A.24, G.27, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, M.69, V.70, G.125, W.126, Y.371, V.374, F.377, H.378, L.381, S.382, V.386, F.393, M.417, T.424, F.425, Q.428, R.438, R.439, Y.440, S.458, V.465, M.468 Ligands: TGL.82 34 PLIP interactions: 34 interactions with chain A, Hydrophobic interactions: A:I.37, A:V.58, A:V.58, A:A.62, A:M.65, A:I.66, A:V.70, A:V.374, A:F.377, A:F.377, A:L.381, A:L.381, A:V.386, A:V.386, A:F.393, A:F.393, A:T.424, A:F.425 Hydrogen bonds: A:R.38, A:Y.54, A:W.126, A:Y.371, A:S.382, A:Q.428, A:R.439, A:Y.440 Water bridges: A:R.438, A:R.438, A:S.461 Salt bridges: A:R.438, A:R.439 pi-Stacking: A:F.425 Metal complexes: A:H.61, A:H.378 HEA.2: 35 residues within 4Å: Chain A: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.309, I.312, A.313, T.316, G.317, V.320, F.321, F.348, T.349, G.352, L.353, G.355, I.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438 Chain B: I.34, P.69, I.72, L.73 Ligands: PER.9 38 PLIP interactions: 32 interactions with chain A, 5 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: A:W.236, A:V.243, A:V.243, A:V.243, A:I.247, A:I.247, A:T.309, A:T.316, A:V.320, A:F.321, A:F.348, A:T.349, A:I.356, A:I.356, A:L.358, A:V.373, A:F.377, A:F.377, A:V.380, A:L.381, A:L.381, B:I.34, B:I.34, B:P.69, B:I.72, B:L.73 Hydrogen bonds: A:W.126, A:Y.244 Water bridges: A:H.291, A:T.316, A:D.369, A:D.369, A:R.439 Salt bridges: A:H.368, A:R.438 pi-Cation interactions: A:H.240 Metal complexes: A:H.376, H2O.1 HEA.90: 34 residues within 4Å: Chain N: A.24, G.27, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, M.69, V.70, G.125, W.126, Y.371, F.377, H.378, L.381, S.382, V.386, F.393, M.417, T.424, F.425, Q.428, R.438, R.439, Y.440, S.458, V.465, M.468 Ligands: TGL.96 32 PLIP interactions: 32 interactions with chain N, Hydrophobic interactions: N:I.37, N:V.58, N:V.58, N:A.62, N:M.65, N:I.66, N:V.70, N:F.377, N:L.381, N:L.381, N:V.386, N:V.386, N:F.393, N:F.393, N:T.424, N:F.425 Hydrogen bonds: N:R.38, N:Y.54, N:W.126, N:Y.371, N:S.382, N:Q.428, N:R.439, N:Y.440 Water bridges: N:R.438, N:R.438, N:S.461 Salt bridges: N:R.438, N:R.439 pi-Stacking: N:F.425 Metal complexes: N:H.61, N:H.378 HEA.91: 34 residues within 4Å: Chain N: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.309, I.312, A.313, T.316, G.317, V.320, F.348, T.349, G.352, L.353, G.355, I.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438 Chain O: I.34, P.69, I.72, L.73 Ligands: PER.99 37 PLIP interactions: 31 interactions with chain N, 5 interactions with chain O, 1 Ligand-Water interactions, Hydrophobic interactions: N:W.236, N:V.243, N:V.243, N:I.247, N:I.247, N:T.309, N:A.313, N:V.320, N:F.348, N:I.356, N:I.356, N:L.358, N:V.373, N:F.377, N:F.377, N:V.380, N:L.381, N:L.381, O:I.34, O:I.34, O:P.69, O:I.72, O:L.73 Hydrogen bonds: N:W.126, N:Y.244 Water bridges: N:H.291, N:T.316, N:D.369, N:D.369, N:R.438, N:R.438 Salt bridges: N:H.368, N:R.438, N:R.439 pi-Cation interactions: N:H.240 Metal complexes: N:H.376, H2O.64

2 x CU: COPPER (II) ION(Non-covalent)

CU.3: 4 residues within 4Å: Chain A: H.240, H.290, H.291 Ligands: PER.9 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.240, A:H.290, A:H.291, H2O.9 CU.92: 4 residues within 4Å: Chain N: H.240, H.290, H.291 Ligands: PER.99 4 PLIP interactions: 3 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:H.240, N:H.290, N:H.291, H2O.71

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: H.368, D.369 Chain B: S.197, E.198 6 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:H.368, A:D.369, B:E.198, H2O.12, H2O.12, H2O.16 MG.93: 4 residues within 4Å: Chain N: H.368, D.369 Chain O: S.197, E.198 6 PLIP interactions: 2 interactions with chain N, 1 interactions with chain O, 3 Ligand-Water interactions Metal complexes: N:H.368, N:D.369, O:E.198, H2O.71, H2O.74, H2O.76

4 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: E.40, Q.43, G.45, S.441, D.442 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.441 Water bridges: A:Q.43 NA.31: 3 residues within 4Å: Chain C: H.146, H.230, E.234 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.146 NA.94: 5 residues within 4Å: Chain N: E.40, Q.43, G.45, S.441, D.442 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:E.40 NA.118: 3 residues within 4Å: Chain P: H.146, H.230, E.234 1 PLIP interactions: 1 interactions with chain P Hydrogen bonds: P:E.234

6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)

TGL.6: 18 residues within 4Å: Chain A: F.346, V.350, Y.379, N.422, F.426, P.427, H.429, F.430, L.433, W.450 Chain B: L.7, G.8, L.28, F.32, S.35, S.36, L.39 Chain I: R.43 20 PLIP interactions: 12 interactions with chain A, 6 interactions with chain B, 2 interactions with chain I Hydrophobic interactions: A:F.346, A:V.350, A:N.422, A:F.426, A:F.426, A:F.426, A:F.426, A:F.426, A:P.427, A:F.430, A:L.433, A:W.450, B:F.32, B:F.32, B:L.39 Water bridges: B:G.8, B:F.9, I:R.43 Salt bridges: B:H.24, I:R.43 TGL.7: 26 residues within 4Å: Chain A: W.334, M.339, L.342, G.343, K.411, F.414, A.415, V.419 Chain B: L.39, I.42, L.46, T.47, T.48, K.49 Chain D: R.70, S.71, T.72, E.74, W.75, V.78, M.83, I.86 Chain I: R.16, H.20 Ligands: DMU.23, DMU.57 14 PLIP interactions: 7 interactions with chain D, 3 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: D:W.75, D:V.78, D:V.78, D:I.86, A:W.334, A:W.334, A:V.419, B:L.39, B:I.42, B:L.46, B:K.49 Hydrogen bonds: D:T.72, D:E.74, D:W.75 TGL.82: 25 residues within 4Å: Chain A: F.2, T.17, L.18, L.21, F.22, W.25, F.102, P.106, F.109, L.113, F.393, F.400, S.401 Chain L: N.9, I.10, P.11, F.12, S.13, R.19, M.23, M.24, F.27, F.28, S.30 Ligands: HEA.1 18 PLIP interactions: 11 interactions with chain A, 7 interactions with chain L Hydrophobic interactions: A:T.17, A:L.18, A:L.21, A:F.22, A:F.22, A:W.25, A:W.25, A:F.102, A:F.109, A:L.113, A:F.393, L:I.10, L:F.12, L:F.12, L:F.12, L:F.27, L:F.28, L:F.28 TGL.95: 20 residues within 4Å: Chain N: F.346, T.354, Y.379, F.418, V.419, N.422, M.423, F.426, H.429, F.430, L.433 Chain O: L.7, G.8, H.24, L.28, V.31, F.32, S.35 Chain V: K.42, R.43 14 PLIP interactions: 9 interactions with chain N, 4 interactions with chain O, 1 interactions with chain V Hydrophobic interactions: N:T.354, N:F.418, N:M.423, N:F.426, N:F.426, N:F.426, N:F.426, N:H.429, N:F.430, O:V.31, O:F.32 Water bridges: O:G.8 Salt bridges: O:H.24, V:R.43 TGL.96: 26 residues within 4Å: Chain N: T.17, L.18, L.20, L.21, W.25, W.81, P.106, F.109, L.110, L.112, L.113, F.393, F.400, S.401, I.472 Chain Y: N.9, I.10, P.11, F.12, S.13, R.19, M.23, F.27, F.28, S.30 Ligands: HEA.90 21 PLIP interactions: 9 interactions with chain Y, 12 interactions with chain N Hydrophobic interactions: Y:I.10, Y:F.12, Y:F.12, Y:F.27, Y:F.27, Y:F.27, Y:F.27, Y:F.28, Y:F.28, N:T.17, N:L.18, N:L.20, N:W.25, N:W.25, N:W.81, N:F.109, N:F.109, N:L.112, N:L.113, N:I.472, N:I.472 TGL.97: 16 residues within 4Å: Chain N: W.334, L.342, F.414, A.415, V.419 Chain O: L.39, I.42, L.46, T.47 Chain Q: R.70, S.71, E.74, W.75, V.78, M.83, I.86 12 PLIP interactions: 2 interactions with chain Q, 3 interactions with chain O, 7 interactions with chain N Hydrophobic interactions: Q:W.75, Q:I.86, O:L.39, O:L.46, O:T.47, N:W.334, N:W.334, N:W.334, N:L.342, N:F.414, N:A.415, N:V.419

8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)

PGV.8: 14 residues within 4Å: Chain A: N.406, T.408, W.409, I.412 Chain D: A.81, F.84 Chain K: F.4, H.5 Chain M: P.12, Q.15, A.16, L.19, S.20 Ligands: DMU.79 12 PLIP interactions: 4 interactions with chain M, 5 interactions with chain A, 1 interactions with chain K, 2 interactions with chain D Hydrophobic interactions: M:P.12, M:Q.15, M:A.16, M:L.19, A:W.409, A:W.409, A:W.409, A:I.412, K:F.4, D:A.81, D:F.84 Hydrogen bonds: A:T.408 PGV.11: 29 residues within 4Å: Chain A: F.94, P.95, R.96, M.97, M.100, F.148, H.151, L.152, L.159, P.200 Chain C: H.7, V.9, G.18, A.22, T.26, N.48, T.51, M.52, W.55, W.56, V.59, E.62, H.69, L.77, G.80, S.87, F.91 Ligands: PEK.33, PGV.35 17 PLIP interactions: 8 interactions with chain A, 9 interactions with chain C Hydrophobic interactions: A:F.148, A:L.152, A:L.159, A:P.200, C:A.22, C:T.26, C:T.51, C:W.55, C:W.55, C:W.55, C:W.56, C:F.91 Hydrogen bonds: A:R.96, A:R.96, A:M.97, C:W.55 Salt bridges: A:R.96 PGV.35: 24 residues within 4Å: Chain C: M.49, W.56, V.59, I.60, S.63, T.64, H.69, M.81, F.84, E.88, F.91, H.205, I.208, F.212, R.219, H.224, F.225, T.226, H.229, H.230, F.231, G.232 Ligands: PGV.11, CDL.37 29 PLIP interactions: 27 interactions with chain C, 2 interactions with chain F Hydrophobic interactions: C:W.56, C:W.56, C:W.56, C:W.56, C:W.56, C:W.56, C:I.60, C:F.84, C:F.91, C:I.208, C:I.208, C:I.208, C:F.212, C:F.212, C:F.212, C:F.212 Hydrogen bonds: C:S.63, C:R.219, C:F.231, C:G.232 Water bridges: C:S.63, C:R.219, C:H.229, C:H.229, F:Q.12, F:E.17 Salt bridges: C:R.219, C:R.219, C:H.229 PGV.36: 8 residues within 4Å: Chain A: F.237 Chain C: W.97, Y.100, H.101, L.104 Chain T: A.1 Ligands: CHD.30, CDL.144 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:W.97, C:W.97, C:W.97, C:L.104, A:F.237 PGV.98: 14 residues within 4Å: Chain N: N.406, T.408, W.409, R.480 Chain Q: T.77, A.81, F.84 Chain X: F.4, H.5 Chain Z: P.12, Q.15, A.16, L.19, S.20 16 PLIP interactions: 4 interactions with chain X, 4 interactions with chain Z, 4 interactions with chain Q, 4 interactions with chain N Hydrophobic interactions: X:F.4, X:F.4, X:F.4, Z:P.12, Z:Q.15, Z:A.16, Z:L.19, Q:T.77, Q:F.84, Q:F.84, Q:F.84, N:T.408, N:W.409, N:W.409 Salt bridges: X:H.5 Water bridges: N:T.404 PGV.100: 30 residues within 4Å: Chain N: F.94, P.95, R.96, M.97, M.100, F.148, H.151, I.158, L.159 Chain P: H.7, V.9, G.18, A.22, M.25, T.26, N.48, T.51, M.52, W.55, W.56, V.59, E.62, H.69, L.77, G.80, F.84, S.87, F.91 Ligands: PEK.120, PGV.121 17 PLIP interactions: 9 interactions with chain P, 8 interactions with chain N Hydrophobic interactions: P:A.22, P:T.26, P:T.51, P:W.55, P:W.55, P:W.55, P:W.56, P:F.91, N:F.148, N:I.158, N:L.159 Hydrogen bonds: P:W.55, N:R.96, N:R.96, N:M.97 Water bridges: N:A.93 Salt bridges: N:R.96 PGV.121: 24 residues within 4Å: Chain P: M.52, W.56, V.59, I.60, S.63, T.64, H.69, L.77, M.81, F.84, F.91, H.205, I.208, T.211, F.212, R.219, H.224, F.225, T.226, H.229, H.230, F.231, G.232 Ligands: PGV.100 26 PLIP interactions: 2 interactions with chain S, 24 interactions with chain P Water bridges: S:Q.12, S:E.17, P:S.63, P:R.219, P:H.229, P:H.229 Hydrophobic interactions: P:W.56, P:W.56, P:W.56, P:W.56, P:W.56, P:I.60, P:F.84, P:F.84, P:F.91, P:I.208, P:T.211, P:F.212, P:F.212 Hydrogen bonds: P:S.63, P:R.219, P:F.231, P:G.232 Salt bridges: P:R.219, P:R.219, P:H.229 PGV.122: 5 residues within 4Å: Chain G: A.1 Chain P: T.93, W.97, H.101 Ligands: CHD.117 5 PLIP interactions: 4 interactions with chain P, 1 interactions with chain G Hydrophobic interactions: P:T.93, P:W.97, P:W.97, G:A.1 Salt bridges: P:H.101

2 x PER: PEROXIDE ION(Non-covalent)

PER.9: 6 residues within 4Å: Chain A: H.240, V.243, H.290, H.291 Ligands: HEA.2, CU.3 No protein-ligand interaction detected (PLIP) PER.99: 6 residues within 4Å: Chain N: H.240, V.243, H.290, H.291 Ligands: HEA.91, CU.92 No protein-ligand interaction detected (PLIP)

2 x PSC: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE(Non-covalent)

PSC.10: 13 residues within 4Å: Chain A: F.321, L.324, A.325, H.328 Chain B: I.41, H.52, M.56, V.61, I.64, W.65, P.69, I.72 Chain I: L.17 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:I.41, B:M.56, B:V.61, B:I.64, B:W.65, B:W.65, B:W.65, B:P.69, B:I.72, A:F.321, A:F.321, A:L.324, A:A.325 PSC.112: 16 residues within 4Å: Chain N: F.321, L.324, A.325, H.328 Chain O: L.37, I.41, M.45, H.52, M.56, D.57, V.61, I.64, W.65, L.68, P.69, I.72 15 PLIP interactions: 11 interactions with chain O, 4 interactions with chain N Hydrophobic interactions: O:L.37, O:I.41, O:I.41, O:M.56, O:V.61, O:W.65, O:W.65, O:L.68, O:P.69, O:I.72, N:F.321, N:F.321, N:L.324, N:A.325 Water bridges: O:H.52

80 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.12: 5 residues within 4Å: Chain A: K.333, T.484, D.486 Chain M: I.1, T.2 Ligand excluded by PLIP EDO.13: 7 residues within 4Å: Chain A: Y.260, Y.261, V.394, H.395, P.398, W.494 Chain M: I.1 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain A: L.136, A.137 Chain B: Q.103 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: H.256, T.259, K.265, T.490, N.491 Ligands: EDO.64 Ligand excluded by PLIP EDO.16: 8 residues within 4Å: Chain A: Y.19, N.80, M.92, N.98, S.101, G.160, N.163, F.164 Ligand excluded by PLIP EDO.17: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain A: E.119, A.120 Ligand excluded by PLIP EDO.19: 7 residues within 4Å: Chain A: G.269, Y.270, M.271, G.272 Chain B: A.58, E.62 Ligands: CHD.25 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain A: K.265, E.266 Chain B: T.55 Chain F: N.66, T.68, I.70, S.84 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain A: K.265, T.489 Chain F: I.70, S.84 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain A: V.482, L.483, G.497, C.498 Chain D: S.5, Y.8 Ligand excluded by PLIP EDO.26: 7 residues within 4Å: Chain A: Y.447 Chain B: M.1, A.2, Q.10, L.136, P.166, Y.193 Ligand excluded by PLIP EDO.27: 4 residues within 4Å: Chain B: M.146, E.147, P.215, L.216 Ligand excluded by PLIP EDO.28: 3 residues within 4Å: Chain B: H.102, E.157, D.158 Ligand excluded by PLIP EDO.29: 3 residues within 4Å: Chain B: E.157, P.176 Ligands: EDO.41 Ligand excluded by PLIP EDO.40: 5 residues within 4Å: Chain C: G.139, T.143, H.241 Chain G: W.16 Ligands: EDO.46 Ligand excluded by PLIP EDO.41: 6 residues within 4Å: Chain A: P.222 Chain B: G.177 Chain C: E.109 Chain H: W.62 Ligands: EDO.29, EDO.42 Ligand excluded by PLIP EDO.42: 5 residues within 4Å: Chain B: G.177 Chain C: E.109 Chain H: W.62, W.66 Ligands: EDO.41 Ligand excluded by PLIP EDO.43: 9 residues within 4Å: Chain C: W.144, S.148, D.153, H.156 Chain F: A.1 Chain G: A.13, R.14, R.17 Ligands: EDO.65 Ligand excluded by PLIP EDO.44: 4 residues within 4Å: Chain C: L.125, Y.251, W.256 Ligands: CHD.117 Ligand excluded by PLIP EDO.45: 1 residues within 4Å: Chain C: F.249 Ligand excluded by PLIP EDO.46: 2 residues within 4Å: Chain C: V.245 Ligands: EDO.40 Ligand excluded by PLIP EDO.47: 4 residues within 4Å: Chain C: H.1, Q.2, H.68 Chain F: L.16 Ligand excluded by PLIP EDO.48: 3 residues within 4Å: Chain C: Q.66 Chain F: G.15 Chain J: Q.13 Ligand excluded by PLIP EDO.49: 6 residues within 4Å: Chain C: N.10, Q.66 Chain J: L.18, V.20, K.23 Ligands: EDO.74 Ligand excluded by PLIP EDO.51: 7 residues within 4Å: Chain A: T.488, L.495 Chain D: Y.8, A.9, L.10, S.12 Chain F: W.73 Ligand excluded by PLIP EDO.52: 6 residues within 4Å: Chain D: K.118, L.121, D.122, W.135, N.140 Chain K: P.45 Ligand excluded by PLIP EDO.53: 6 residues within 4Å: Chain D: S.46, L.48, I.50, K.53 Chain E: S.95 Ligands: EDO.60 Ligand excluded by PLIP EDO.54: 3 residues within 4Å: Chain D: S.1, V.2, N.29 Ligand excluded by PLIP EDO.55: 4 residues within 4Å: Chain B: P.130 Chain D: E.111, W.112, K.115 Ligand excluded by PLIP EDO.58: 3 residues within 4Å: Chain E: Y.14, K.17, E.24 Ligand excluded by PLIP EDO.59: 4 residues within 4Å: Chain E: R.49, R.52, R.53, L.92 Ligand excluded by PLIP EDO.60: 7 residues within 4Å: Chain D: K.53 Chain E: L.89, N.90, G.93, I.94, S.95 Ligands: EDO.53 Ligand excluded by PLIP EDO.62: 6 residues within 4Å: Chain A: Y.510 Chain F: P.36, K.37, T.39, N.47, L.48 Ligand excluded by PLIP EDO.63: 7 residues within 4Å: Chain A: E.507 Chain C: T.3 Chain F: P.30, N.32, P.50, R.56, H.94 Ligand excluded by PLIP EDO.64: 7 residues within 4Å: Chain A: T.489, T.490 Chain F: S.67, T.68, V.69, W.71 Ligands: EDO.15 Ligand excluded by PLIP EDO.65: 6 residues within 4Å: Chain F: A.1 Chain G: R.14, R.17 Chain S: D.65 Ligands: EDO.43, CHD.70 Ligand excluded by PLIP EDO.66: 3 residues within 4Å: Chain C: H.229 Chain F: D.9, E.17 Ligand excluded by PLIP EDO.67: 2 residues within 4Å: Chain D: Y.8 Chain F: K.55 Ligand excluded by PLIP EDO.68: 4 residues within 4Å: Chain C: F.223 Chain F: G.5, P.7 Chain J: N.3 Ligand excluded by PLIP EDO.69: 4 residues within 4Å: Chain F: F.72, Q.80, R.81, P.83 Ligand excluded by PLIP EDO.71: 6 residues within 4Å: Chain C: G.118 Chain G: A.46, F.47, I.48, L.53, R.54 Ligand excluded by PLIP EDO.74: 6 residues within 4Å: Chain C: N.10, P.11 Chain J: G.17, L.18, P.19 Ligands: EDO.49 Ligand excluded by PLIP EDO.75: 4 residues within 4Å: Chain F: T.14 Chain J: Q.9, K.10, Q.13 Ligand excluded by PLIP EDO.84: 4 residues within 4Å: Chain L: K.8, S.13, E.15 Ligands: EDO.85 Ligand excluded by PLIP EDO.85: 5 residues within 4Å: Chain L: G.7, K.8, I.10, F.12 Ligands: EDO.84 Ligand excluded by PLIP EDO.88: 5 residues within 4Å: Chain A: T.46, L.47 Chain D: V.100 Chain M: D.38, K.41 Ligand excluded by PLIP EDO.101: 6 residues within 4Å: Chain N: H.256, T.259, K.265, T.490, N.491 Ligands: EDO.137 Ligand excluded by PLIP EDO.102: 9 residues within 4Å: Chain N: L.483, T.484, V.485, T.488, W.494, G.497, C.498 Chain Q: Y.8 Ligands: EDO.135 Ligand excluded by PLIP EDO.103: 5 residues within 4Å: Chain N: K.265, T.489 Chain S: I.70, P.83, S.84 Ligand excluded by PLIP EDO.104: 6 residues within 4Å: Chain N: E.507 Chain P: T.3 Chain S: P.30, N.32, P.50, R.56 Ligand excluded by PLIP EDO.105: 6 residues within 4Å: Chain N: Y.260, Y.261, V.394, H.395, W.494 Chain Z: I.1 Ligand excluded by PLIP EDO.106: 2 residues within 4Å: Chain N: P.131, D.221 Ligand excluded by PLIP EDO.107: 7 residues within 4Å: Chain N: T.10, N.11, D.91, Y.502, H.503 Chain P: V.9 Ligands: EDO.155 Ligand excluded by PLIP EDO.108: 8 residues within 4Å: Chain N: K.265, E.266 Chain O: T.55 Chain S: N.66, T.68, I.70, S.84 Ligands: EDO.141 Ligand excluded by PLIP EDO.109: 8 residues within 4Å: Chain N: P.174, T.509, Y.510, V.511 Chain S: N.32, L.34, P.36, R.56 Ligand excluded by PLIP EDO.110: 6 residues within 4Å: Chain N: V.485, D.486, L.487, T.488, T.489 Ligands: EDO.135 Ligand excluded by PLIP EDO.113: 7 residues within 4Å: Chain N: Y.447 Chain O: M.1, A.2, Q.10, L.136, P.166, Y.193 Ligand excluded by PLIP EDO.114: 3 residues within 4Å: Chain N: L.136, A.137 Chain O: Q.103 Ligand excluded by PLIP EDO.115: 2 residues within 4Å: Chain N: T.46 Chain O: F.206 Ligand excluded by PLIP EDO.125: 4 residues within 4Å: Chain P: G.139, T.143, H.241 Ligands: CDL.144 Ligand excluded by PLIP EDO.126: 2 residues within 4Å: Chain P: H.241, V.245 Ligand excluded by PLIP EDO.127: 4 residues within 4Å: Chain N: P.222, A.223 Chain O: G.177 Chain P: E.109 Ligand excluded by PLIP EDO.128: 6 residues within 4Å: Chain P: W.144, S.148, H.156 Chain T: A.13, R.14, R.17 Ligand excluded by PLIP EDO.129: 1 residues within 4Å: Chain P: H.68 Ligand excluded by PLIP EDO.130: 5 residues within 4Å: Chain P: N.10, P.11 Chain W: G.17, P.19 Ligands: EDO.155 Ligand excluded by PLIP EDO.131: 3 residues within 4Å: Chain P: N.123, L.125 Ligands: CHD.30 Ligand excluded by PLIP EDO.135: 10 residues within 4Å: Chain N: T.488, L.495 Chain Q: D.7, Y.8, L.10, P.11, S.12 Ligands: EDO.102, EDO.110, EDO.142 Ligand excluded by PLIP EDO.137: 7 residues within 4Å: Chain N: T.489, T.490 Chain S: S.67, T.68, V.69, W.71 Ligands: EDO.101 Ligand excluded by PLIP EDO.138: 6 residues within 4Å: Chain N: Y.510 Chain S: P.36, K.37, T.39, N.47, L.48 Ligand excluded by PLIP EDO.139: 4 residues within 4Å: Chain S: F.72, Q.80, R.81, P.83 Ligand excluded by PLIP EDO.140: 3 residues within 4Å: Chain P: H.229 Chain S: D.9, E.17 Ligand excluded by PLIP EDO.141: 5 residues within 4Å: Chain N: E.266 Chain S: N.66, S.67, T.68 Ligands: EDO.108 Ligand excluded by PLIP EDO.142: 8 residues within 4Å: Chain N: L.495 Chain Q: Y.8, A.9, L.10, P.11 Chain S: F.72, W.73 Ligands: EDO.135 Ligand excluded by PLIP EDO.145: 6 residues within 4Å: Chain P: G.118 Chain T: A.46, F.47, I.48, L.53, R.54 Ligand excluded by PLIP EDO.146: 5 residues within 4Å: Chain P: F.33 Chain T: K.58, P.59, F.60, S.61 Ligand excluded by PLIP EDO.147: 4 residues within 4Å: Chain T: P.49, Y.50, H.51, P.79 Ligand excluded by PLIP EDO.149: 4 residues within 4Å: Chain S: T.14 Chain W: Q.9, K.10, Q.13 Ligand excluded by PLIP EDO.150: 7 residues within 4Å: Chain N: V.118, E.119 Chain W: A.53, S.54, F.55, P.56 Chain Y: K.45 Ligand excluded by PLIP EDO.155: 5 residues within 4Å: Chain P: P.11 Chain Y: H.1, Y.2 Ligands: EDO.107, EDO.130 Ligand excluded by PLIP

23 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-functional Binders)(Non-covalent)

DMU.23: 3 residues within 4Å: Ligands: TGL.7, DMU.78, DMU.81 No protein-ligand interaction detected (PLIP) DMU.39: 10 residues within 4Å: Chain A: L.110 Chain C: S.27, M.31, F.35 Chain J: Y.45, S.46, Y.48, C.49, L.50, W.52 6 PLIP interactions: 3 interactions with chain J, 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: J:L.50, C:M.31, C:F.35, A:L.110 Hydrogen bonds: J:Y.45, J:Y.45 DMU.50: 5 residues within 4Å: Chain C: W.32, M.38, L.41 Chain G: F.69 Ligands: PEK.33 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain C Hydrophobic interactions: G:F.69, C:W.32, C:L.41 DMU.56: 7 residues within 4Å: Chain D: L.91, I.94, H.98 Chain K: Q.30, I.31, G.32 Ligands: DMU.80 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain K Hydrophobic interactions: D:L.91, D:I.94 Water bridges: D:K.97, K:G.32, K:G.32 Salt bridges: D:H.98 DMU.57: 3 residues within 4Å: Chain D: W.75, V.79 Ligands: TGL.7 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:W.75, D:W.75, D:W.75, D:V.79 DMU.76: 7 residues within 4Å: Chain C: T.39, I.43 Chain J: T.37, L.38, G.41, G.42, Y.45 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain J Hydrophobic interactions: C:T.39, C:I.43, J:Y.45 DMU.77: 5 residues within 4Å: Chain K: W.24, V.25, A.28 Ligands: DMU.78, DMU.81 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:W.24, K:V.25, K:A.28 DMU.78: 5 residues within 4Å: Chain A: M.449 Chain K: A.28, W.35 Ligands: DMU.23, DMU.77 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:W.35 DMU.79: 4 residues within 4Å: Chain K: S.15, F.19 Ligands: PGV.8, DMU.80 2 PLIP interactions: 2 interactions with chain K Hydrophobic interactions: K:F.19, K:F.19 DMU.80: 3 residues within 4Å: Chain K: Y.26 Ligands: DMU.56, DMU.79 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:Y.26, K:Y.26, K:Y.26 DMU.81: 7 residues within 4Å: Chain A: M.423 Chain D: I.86 Chain K: V.21, W.24, V.25 Ligands: DMU.23, DMU.77 5 PLIP interactions: 4 interactions with chain K, 1 interactions with chain D Hydrophobic interactions: K:V.21, K:W.24, K:W.24, K:W.24, D:I.86 DMU.86: 9 residues within 4Å: Chain A: M.117 Chain J: F.55 Chain L: A.34, F.37, I.38, R.40, H.41, L.44, K.45 7 PLIP interactions: 7 interactions with chain L Hydrophobic interactions: L:A.34, L:I.38 Hydrogen bonds: L:R.40, L:R.40, L:L.44 Water bridges: L:H.41 Salt bridges: L:H.41 DMU.87: 11 residues within 4Å: Chain A: F.459 Chain D: W.95, Y.99 Chain L: F.36 Chain M: L.27, L.28, A.30, G.31, W.32, Y.35, H.36 10 PLIP interactions: 1 interactions with chain L, 3 interactions with chain M, 4 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: L:F.36, M:L.27, M:A.30, D:W.95, A:F.459, A:F.459 Water bridges: M:H.36, D:Y.99, D:Y.99, D:Y.99 DMU.116: 8 residues within 4Å: Chain O: H.26, I.30, L.33, I.34, L.37, I.72, L.75, R.82 9 PLIP interactions: 9 interactions with chain O Hydrophobic interactions: O:I.30, O:L.33, O:I.34, O:L.37, O:I.72, O:L.75 Hydrogen bonds: O:R.82, O:R.82 Water bridges: O:H.26 DMU.124: 10 residues within 4Å: Chain N: L.110 Chain P: S.27, M.31, F.35 Chain W: Y.45, S.46, Y.48, C.49, W.52 Ligands: DMU.133 7 PLIP interactions: 3 interactions with chain P, 1 interactions with chain N, 3 interactions with chain W Hydrophobic interactions: P:M.31, P:F.35, P:F.35, N:L.110 Hydrogen bonds: W:Y.45, W:Y.45, W:W.52 DMU.132: 7 residues within 4Å: Chain P: L.29, W.32, M.38 Chain T: S.61, W.62, F.69 Ligands: PEK.120 4 PLIP interactions: 2 interactions with chain T, 2 interactions with chain P Hydrophobic interactions: T:W.62, P:L.29, P:W.32 Hydrogen bonds: T:S.61 DMU.133: 10 residues within 4Å: Chain P: M.31, N.36, S.37, T.39, I.43 Chain W: T.37, G.41, G.42, Y.45 Ligands: DMU.124 9 PLIP interactions: 6 interactions with chain P, 3 interactions with chain W Hydrophobic interactions: P:I.43, W:Y.45, W:Y.45 Hydrogen bonds: P:S.37, P:S.37, W:Y.45 Water bridges: P:N.36, P:T.39, P:T.39 DMU.134: 3 residues within 4Å: Chain Q: L.91, W.95, H.98 2 PLIP interactions: 2 interactions with chain Q Hydrophobic interactions: Q:L.91, Q:W.95 DMU.151: 5 residues within 4Å: Chain N: M.423 Chain Q: I.86 Chain X: W.24, V.25 Ligands: DMU.153 4 PLIP interactions: 3 interactions with chain X, 1 interactions with chain Q Hydrophobic interactions: X:W.24, X:W.24, X:V.25, Q:I.86 DMU.152: 4 residues within 4Å: Chain N: M.449 Chain O: M.5 Chain X: A.28, W.35 2 PLIP interactions: 2 interactions with chain X Hydrophobic interactions: X:W.35, X:W.35 DMU.153: 3 residues within 4Å: Chain X: W.24, A.28 Ligands: DMU.151 2 PLIP interactions: 2 interactions with chain X Hydrophobic interactions: X:W.24, X:A.28 DMU.154: 3 residues within 4Å: Chain X: T.18, F.19, A.22 2 PLIP interactions: 2 interactions with chain X Hydrophobic interactions: X:F.19, X:F.19 DMU.157: 12 residues within 4Å: Chain N: F.459 Chain Q: L.92, W.95, Y.99 Chain Z: L.27, L.28, A.30, G.31, W.32, L.34, Y.35, H.36 9 PLIP interactions: 1 interactions with chain N, 5 interactions with chain Q, 3 interactions with chain Z Hydrophobic interactions: N:F.459, Q:L.92, Q:W.95, Q:W.95, Q:W.95, Z:L.27, Z:A.30 Water bridges: Q:Y.99, Z:H.36

2 x CUA: DINUCLEAR COPPER ION(Non-covalent)

CUA.24: 6 residues within 4Å: Chain B: H.161, C.196, E.198, C.200, H.204, M.207 7 PLIP interactions: 7 interactions with chain B Metal complexes: B:H.161, B:C.196, B:C.196, B:E.198, B:C.200, B:C.200, B:H.204 CUA.111: 6 residues within 4Å: Chain O: H.161, C.196, E.198, C.200, H.204, M.207 7 PLIP interactions: 7 interactions with chain O Metal complexes: O:H.161, O:C.196, O:C.196, O:E.198, O:C.200, O:C.200, O:H.204

8 x CHD: CHOLIC ACID(Non-covalent)

CHD.25: 14 residues within 4Å: Chain A: M.271, G.272, W.275 Chain B: Q.59, E.62, T.63, T.66 Chain T: R.14, R.17, F.18, F.21, G.22 Ligands: EDO.19, PEK.143 15 PLIP interactions: 7 interactions with chain T, 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: T:F.21, A:M.271, A:W.275, A:W.275, A:W.275 Water bridges: T:R.17, T:R.17, T:R.17, T:R.17, B:T.63 Salt bridges: T:R.14, T:R.17 Hydrogen bonds: B:Q.59, B:E.62, B:T.63 CHD.30: 11 residues within 4Å: Chain A: H.233, W.288, D.300, T.301, Y.304, F.305 Chain C: W.97, H.101 Chain P: L.125 Ligands: PGV.36, EDO.131 11 PLIP interactions: 7 interactions with chain A, 3 interactions with chain C, 1 interactions with chain P Hydrophobic interactions: A:W.288, A:Y.304, A:F.305, C:W.97, P:L.125 Hydrogen bonds: A:T.301, C:W.97 Water bridges: A:D.300, A:T.301 Salt bridges: A:H.233, C:H.101 CHD.38: 7 residues within 4Å: Chain C: R.154, L.158, Q.159, F.162, F.217, L.221 Chain J: F.1 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain J Hydrophobic interactions: C:L.158, C:F.162, C:F.162, C:F.162, C:F.217, C:L.221 Salt bridges: C:R.154 Hydrogen bonds: J:F.1 CHD.70: 13 residues within 4Å: Chain G: R.14, R.17, F.18, F.21, G.22 Chain N: M.271, G.272, W.275 Chain O: E.62, T.63, T.66 Ligands: PEK.34, EDO.65 15 PLIP interactions: 4 interactions with chain O, 7 interactions with chain G, 4 interactions with chain N Hydrophobic interactions: O:T.66, G:F.18, G:F.18, G:F.21, N:M.271, N:W.275, N:W.275, N:W.275 Hydrogen bonds: O:E.62, O:T.63 Water bridges: O:T.63, G:R.17, G:R.17 Salt bridges: G:R.14, G:R.17 CHD.73: 5 residues within 4Å: Chain J: Y.32, R.33, M.36, T.37, L.40 4 PLIP interactions: 4 interactions with chain J Hydrophobic interactions: J:Y.32, J:R.33, J:M.36, J:T.37 CHD.83: 4 residues within 4Å: Chain L: W.18 Chain M: E.14, I.17, V.21 3 PLIP interactions: 3 interactions with chain M Hydrophobic interactions: M:I.17, M:V.21 Water bridges: M:E.14 CHD.117: 11 residues within 4Å: Chain C: L.125 Chain N: H.233, W.288, D.300, T.301, Y.304 Chain P: W.97, H.101 Ligands: EDO.44, CDL.89, PGV.122 11 PLIP interactions: 7 interactions with chain N, 1 interactions with chain C, 3 interactions with chain P Hydrophobic interactions: N:W.288, N:Y.304, C:L.125, P:W.97 Hydrogen bonds: N:T.301, P:W.97 Water bridges: N:D.298, N:D.300, N:T.301 Salt bridges: N:H.233, P:H.101 CHD.156: 6 residues within 4Å: Chain Y: W.18, L.21, A.22 Chain Z: K.13, E.14, I.17 6 PLIP interactions: 3 interactions with chain Z, 3 interactions with chain Y Hydrophobic interactions: Z:K.13, Z:I.17, Y:W.18, Y:W.18 Hydrogen bonds: Z:E.14, Y:A.22

6 x PEK: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE(Non-covalent)

PEK.32: 11 residues within 4Å: Chain C: Y.79, L.83, V.89, T.93, F.96, W.238, F.242, V.245, F.249 Chain T: G.6, H.8 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:Y.79, C:Y.79, C:L.83, C:V.89, C:F.96, C:F.96, C:W.238, C:W.238, C:W.238, C:V.245, C:F.249, C:F.249 PEK.33: 24 residues within 4Å: Chain A: H.151, A.203, L.215 Chain C: L.29, A.176, Y.179, Y.180, A.182, F.184, T.185, I.186, F.196, G.200, F.201, L.204, I.207 Chain G: W.62, T.68, F.69, F.70, H.71, N.76 Ligands: PGV.11, DMU.50 18 PLIP interactions: 9 interactions with chain C, 7 interactions with chain G, 2 interactions with chain A Hydrophobic interactions: C:L.29, C:A.176, C:Y.179, C:I.186, C:F.201, C:F.201, C:F.201, C:I.207, G:W.62, A:A.203, A:L.215 Hydrogen bonds: C:I.186, G:T.68, G:F.70, G:N.76, G:N.76 Water bridges: G:F.69, G:F.69 PEK.34: 11 residues within 4Å: Chain C: Q.159, I.163, T.166, Y.170 Chain G: F.21, G.22, W.36 Chain N: W.275, S.279 Ligands: CHD.70, CDL.89 7 PLIP interactions: 4 interactions with chain C, 2 interactions with chain G, 1 interactions with chain N Hydrophobic interactions: C:I.163, C:T.166, C:Y.170, C:Y.170, G:F.21, G:W.36, N:W.275 PEK.119: 11 residues within 4Å: Chain P: K.75, R.78, Y.79, I.82, V.89, T.93, F.96, W.238, F.242, V.245, F.249 12 PLIP interactions: 12 interactions with chain P Hydrophobic interactions: P:I.82, P:V.89, P:F.96, P:F.96, P:W.238, P:W.238, P:V.245 Hydrogen bonds: P:Y.79 Water bridges: P:R.78 Salt bridges: P:K.75, P:R.78, P:R.78 PEK.120: 24 residues within 4Å: Chain N: H.151, T.207, L.210, L.215 Chain P: W.32, F.33, A.176, Y.179, Y.180, A.182, F.184, T.185, I.186, F.196, G.200, F.201 Chain T: W.62, T.68, F.69, F.70, H.71, N.76 Ligands: PGV.100, DMU.132 19 PLIP interactions: 10 interactions with chain P, 2 interactions with chain N, 7 interactions with chain T Hydrophobic interactions: P:W.32, P:F.33, P:A.176, P:Y.179, P:I.186, P:F.201, P:F.201, P:F.201, N:L.210, N:L.215, T:W.62, T:F.69 Hydrogen bonds: P:Y.179, P:I.186, T:T.68, T:F.70, T:N.76 Water bridges: T:F.69, T:F.69 PEK.143: 14 residues within 4Å: Chain A: W.275, S.279, I.311 Chain B: Q.59, T.66 Chain P: I.163, T.166, Y.170 Chain T: F.21, G.22, L.23, W.36 Ligands: CHD.25, CDL.144 9 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain T, 3 interactions with chain P Hydrophobic interactions: B:T.66, A:W.275, A:I.311, T:F.21, T:L.23, P:Y.170, P:Y.170, P:Y.170 Hydrogen bonds: B:Q.59

4 x CDL: CARDIOLIPIN(Non-covalent)

CDL.37: 18 residues within 4Å: Chain C: T.46, M.49, L.50, Y.53, W.56, R.57, I.60, L.173, I.207, S.210, T.211, I.214, V.215, F.218, R.219, K.222, H.224 Ligands: PGV.35 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:T.46, C:M.49, C:Y.53, C:Y.53, C:Y.53, C:Y.53, C:Y.53, C:W.56, C:W.56, C:L.173, C:I.207, C:T.211, C:I.214, C:I.214, C:V.215, C:F.218 Hydrogen bonds: C:Y.53 CDL.89: 25 residues within 4Å: Chain C: L.125, L.129, T.132, L.136, V.140, V.252, W.256 Chain G: L.23, S.27, L.30, N.34, L.37 Chain N: F.282, I.286, Y.304, S.307, I.311 Chain O: A.70, L.73, I.74, A.77, L.78, L.81 Ligands: PEK.34, CHD.117 17 PLIP interactions: 4 interactions with chain G, 4 interactions with chain C, 5 interactions with chain O, 4 interactions with chain N Hydrophobic interactions: G:L.23, G:L.30, G:L.30, G:L.37, C:T.132, C:L.136, C:V.252, C:W.256, O:A.70, O:L.73, O:A.77, O:L.78, O:L.81, N:F.282, N:I.286, N:Y.304, N:I.311 CDL.123: 12 residues within 4Å: Chain P: M.49, L.50, M.52, Y.53, W.56, R.57, I.60, T.211, I.214, V.215, F.218, H.224 14 PLIP interactions: 14 interactions with chain P Hydrophobic interactions: P:M.49, P:L.50, P:Y.53, P:Y.53, P:Y.53, P:W.56, P:W.56, P:R.57, P:R.57, P:T.211, P:I.214, P:V.215, P:F.218 Hydrogen bonds: P:Y.53 CDL.144: 26 residues within 4Å: Chain A: F.282, Y.304, S.307, I.311, I.314 Chain B: A.70, I.74, A.77, L.81 Chain P: L.129, T.132, S.133, L.136, V.140, L.248, V.252 Chain T: L.23, A.24, S.27, L.30, C.31, N.34, H.38 Ligands: PGV.36, EDO.125, PEK.143 19 PLIP interactions: 5 interactions with chain B, 7 interactions with chain P, 4 interactions with chain A, 3 interactions with chain T Hydrophobic interactions: B:A.70, B:I.74, B:I.74, B:A.77, B:L.81, P:L.129, P:T.132, P:L.136, P:V.140, P:L.248, P:L.248, P:V.252, A:F.282, A:Y.304, A:I.311, A:I.314, T:L.23, T:L.30, T:L.30

2 x ZN: ZINC ION(Non-covalent)

ZN.61: 4 residues within 4Å: Chain F: C.60, C.62, C.82, C.85 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.60, F:C.62, F:C.82, F:C.85 ZN.136: 4 residues within 4Å: Chain S: C.60, C.62, C.82, C.85 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:C.60, S:C.62, S:C.82, S:C.85

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.72: 4 residues within 4Å: Chain H: R.21, Q.25, L.28, R.32 7 PLIP interactions: 7 interactions with chain H Hydrogen bonds: H:Q.25, H:Q.25, H:Q.25 Water bridges: H:R.21, H:R.21 Salt bridges: H:R.21, H:R.32 PO4.148: 4 residues within 4Å: Chain U: R.21, Q.25, L.28, R.32 6 PLIP interactions: 6 interactions with chain U Hydrogen bonds: U:Q.25, U:Q.25 Water bridges: U:R.21, U:R.21 Salt bridges: U:R.21, U:R.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimada, A. et al., Critical roles of the Cu B site in efficient proton pumping as revealed by crystal structures of mammalian cytochrome c oxidase catalytic intermediates. J.Biol.Chem. (2021)

Release Date

2021-07-21

Peptides

Cytochrome c oxidase subunit 1: AN
Cytochrome c oxidase subunit 2: BO
Cytochrome c oxidase subunit 3: CP
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial: DQ
Cytochrome c oxidase subunit 5A, mitochondrial: ER
Cytochrome c oxidase subunit 5B, mitochondrial: FS
Cytochrome c oxidase subunit 6A2, mitochondrial: GT
Cytochrome c oxidase subunit 6B1: HU
Cytochrome c oxidase subunit 6C: IV
Cytochrome c oxidase subunit 7A1, mitochondrial: JW
Cytochrome c oxidase subunit 7B, mitochondrial: KX
Cytochrome c oxidase subunit 7C, mitochondrial: LY
Cytochrome c oxidase subunit 8B, mitochondrial: MZ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N
N

B
B

O
O

C
C

P
P

D
D

Q
Q

E
E

R
R

F
F

S
S

G
G

T
T

H
H

U
U

I
I

V
V

J
J

W
W

K
K

X
X

L
L

Y
Y

M
M

Z
Z

Membrane

We predict this structure to be a membrane protein.
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Cytochrome c oxidase subunit 1

Cytochrome c oxidase subunit 2

Cytochrome c oxidase subunit 3

Cytochrome c oxidase subunit 4 isoform 1, mitochondrial

Cytochrome c oxidase subunit 5A, mitochondrial

Cytochrome c oxidase subunit 5B, mitochondrial

Cytochrome c oxidase subunit 6A2, mitochondrial

Cytochrome c oxidase subunit 6B1

Cytochrome c oxidase subunit 6C

Cytochrome c oxidase subunit 7A1, mitochondrial

Cytochrome c oxidase subunit 7B, mitochondrial

Cytochrome c oxidase subunit 7C, mitochondrial

Cytochrome c oxidase subunit 8B, mitochondrial

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