- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEA: HEME-A(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.3: 4 residues within 4Å:- Chain A: H.240, H.290, H.291
- Ligands: PER.9
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.240, A:H.290, A:H.291, H2O.9
CU.92: 4 residues within 4Å:- Chain N: H.240, H.290, H.291
- Ligands: PER.99
4 PLIP interactions:3 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: N:H.240, N:H.290, N:H.291, H2O.71
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain A: H.368, D.369
- Chain B: S.197, E.198
6 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:H.368, A:D.369, B:E.198, H2O.12, H2O.12, H2O.16
MG.93: 4 residues within 4Å:- Chain N: H.368, D.369
- Chain O: S.197, E.198
6 PLIP interactions:2 interactions with chain N, 1 interactions with chain O, 3 Ligand-Water interactions- Metal complexes: N:H.368, N:D.369, O:E.198, H2O.71, H2O.74, H2O.76
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.5: 5 residues within 4Å:- Chain A: E.40, Q.43, G.45, S.441, D.442
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.40
- Water bridges: A:Q.43
NA.31: 3 residues within 4Å:- Chain C: H.146, H.230, E.234
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.230
NA.94: 5 residues within 4Å:- Chain N: E.40, Q.43, G.45, S.441, D.442
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:Q.43
NA.118: 3 residues within 4Å:- Chain P: H.146, H.230, E.234
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:E.234
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
TGL.6: 18 residues within 4Å:- Chain A: F.346, V.350, Y.379, N.422, F.426, P.427, H.429, F.430, L.433, W.450
- Chain B: L.7, G.8, L.28, F.32, S.35, S.36, L.39
- Chain I: R.43
20 PLIP interactions:6 interactions with chain B, 12 interactions with chain A, 2 interactions with chain I- Hydrophobic interactions: B:F.32, B:F.32, B:L.39, A:F.346, A:V.350, A:N.422, A:F.426, A:F.426, A:F.426, A:F.426, A:F.426, A:P.427, A:F.430, A:L.433, A:W.450
- Water bridges: B:G.8, B:F.9, I:R.43
- Salt bridges: B:H.24, I:R.43
TGL.7: 26 residues within 4Å:- Chain A: W.334, M.339, L.342, G.343, K.411, F.414, A.415, V.419
- Chain B: L.39, I.42, L.46, T.47, T.48, K.49
- Chain D: R.70, S.71, T.72, E.74, W.75, V.78, M.83, I.86
- Chain I: R.16, H.20
- Ligands: DMU.23, DMU.57
14 PLIP interactions:4 interactions with chain B, 3 interactions with chain A, 7 interactions with chain D- Hydrophobic interactions: B:L.39, B:I.42, B:L.46, B:K.49, A:W.334, A:W.334, A:V.419, D:W.75, D:V.78, D:V.78, D:I.86
- Hydrogen bonds: D:T.72, D:E.74, D:W.75
TGL.82: 25 residues within 4Å:- Chain A: F.2, T.17, L.18, L.21, F.22, W.25, F.102, P.106, F.109, L.113, F.393, F.400, S.401
- Chain L: N.9, I.10, P.11, F.12, S.13, R.19, M.23, M.24, F.27, F.28, S.30
- Ligands: HEA.1
18 PLIP interactions:7 interactions with chain L, 11 interactions with chain A- Hydrophobic interactions: L:I.10, L:F.12, L:F.12, L:F.12, L:F.27, L:F.28, L:F.28, A:T.17, A:L.18, A:L.21, A:F.22, A:F.22, A:W.25, A:W.25, A:F.102, A:F.109, A:L.113, A:F.393
TGL.95: 20 residues within 4Å:- Chain N: F.346, T.354, Y.379, F.418, V.419, N.422, M.423, F.426, H.429, F.430, L.433
- Chain O: L.7, G.8, H.24, L.28, V.31, F.32, S.35
- Chain V: K.42, R.43
14 PLIP interactions:1 interactions with chain V, 4 interactions with chain O, 9 interactions with chain N- Salt bridges: V:R.43, O:H.24
- Hydrophobic interactions: O:V.31, O:F.32, N:T.354, N:F.418, N:M.423, N:F.426, N:F.426, N:F.426, N:F.426, N:H.429, N:F.430
- Water bridges: O:G.8
TGL.96: 26 residues within 4Å:- Chain N: T.17, L.18, L.20, L.21, W.25, W.81, P.106, F.109, L.110, L.112, L.113, F.393, F.400, S.401, I.472
- Chain Y: N.9, I.10, P.11, F.12, S.13, R.19, M.23, F.27, F.28, S.30
- Ligands: HEA.90
21 PLIP interactions:12 interactions with chain N, 9 interactions with chain Y- Hydrophobic interactions: N:T.17, N:L.18, N:L.20, N:W.25, N:W.25, N:W.81, N:F.109, N:F.109, N:L.112, N:L.113, N:I.472, N:I.472, Y:I.10, Y:F.12, Y:F.12, Y:F.27, Y:F.27, Y:F.27, Y:F.27, Y:F.28, Y:F.28
TGL.97: 16 residues within 4Å:- Chain N: W.334, L.342, F.414, A.415, V.419
- Chain O: L.39, I.42, L.46, T.47
- Chain Q: R.70, S.71, E.74, W.75, V.78, M.83, I.86
12 PLIP interactions:7 interactions with chain N, 3 interactions with chain O, 2 interactions with chain Q- Hydrophobic interactions: N:W.334, N:W.334, N:W.334, N:L.342, N:F.414, N:A.415, N:V.419, O:L.39, O:L.46, O:T.47, Q:W.75, Q:I.86
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
PGV.8: 14 residues within 4Å:- Chain A: N.406, T.408, W.409, I.412
- Chain D: A.81, F.84
- Chain K: F.4, H.5
- Chain M: P.12, Q.15, A.16, L.19, S.20
- Ligands: DMU.79
14 PLIP interactions:6 interactions with chain M, 5 interactions with chain A, 1 interactions with chain K, 2 interactions with chain D- Hydrophobic interactions: M:P.12, M:Q.15, M:A.16, M:L.19, A:W.409, A:W.409, A:W.409, A:I.412, K:F.4, D:A.81, D:F.84
- Water bridges: M:A.3, M:A.3
- Hydrogen bonds: A:T.408
PGV.11: 29 residues within 4Å:- Chain A: F.94, P.95, R.96, M.97, M.100, F.148, H.151, L.152, L.159, P.200
- Chain C: H.7, V.9, G.18, A.22, T.26, N.48, T.51, M.52, W.55, W.56, V.59, E.62, H.69, L.77, G.80, S.87, F.91
- Ligands: PEK.33, PGV.35
17 PLIP interactions:9 interactions with chain C, 8 interactions with chain A- Hydrophobic interactions: C:A.22, C:T.26, C:T.51, C:W.55, C:W.55, C:W.55, C:W.56, C:F.91, A:F.148, A:L.152, A:L.159, A:P.200
- Hydrogen bonds: C:W.55, A:R.96, A:R.96, A:M.97
- Salt bridges: A:R.96
PGV.35: 24 residues within 4Å:- Chain C: M.49, W.56, V.59, I.60, S.63, T.64, H.69, M.81, F.84, E.88, F.91, H.205, I.208, F.212, R.219, H.224, F.225, T.226, H.229, H.230, F.231, G.232
- Ligands: PGV.11, CDL.37
29 PLIP interactions:27 interactions with chain C, 2 interactions with chain F- Hydrophobic interactions: C:W.56, C:W.56, C:W.56, C:W.56, C:W.56, C:W.56, C:I.60, C:F.84, C:F.91, C:I.208, C:I.208, C:I.208, C:F.212, C:F.212, C:F.212, C:F.212
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEA: HEME-A(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 6 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)