- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEA: HEME-A(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.3: 3 residues within 4Å:- Chain A: H.240, H.290, H.291
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.240, A:H.290, A:H.291, H2O.4
CU.85: 3 residues within 4Å:- Chain N: H.240, H.290, H.291
4 PLIP interactions:3 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: N:H.240, N:H.290, N:H.291, H2O.59
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain A: H.368, D.369
- Chain B: S.197, E.198
6 PLIP interactions:1 interactions with chain B, 2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: B:E.198, A:H.368, A:D.369, H2O.8, H2O.11, H2O.13
MG.86: 4 residues within 4Å:- Chain N: H.368, D.369
- Chain O: S.197, E.198
6 PLIP interactions:2 interactions with chain N, 1 interactions with chain O, 3 Ligand-Water interactions- Metal complexes: N:H.368, N:D.369, O:E.198, H2O.64, H2O.65, H2O.67
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.5: 5 residues within 4Å:- Chain A: E.40, Q.43, G.45, S.441, D.442
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.441
NA.27: 3 residues within 4Å:- Chain C: H.146, H.230, E.234
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.146
NA.87: 5 residues within 4Å:- Chain N: E.40, Q.43, G.45, S.441, D.442
2 PLIP interactions:2 interactions with chain N- Hydrogen bonds: N:D.442
- Water bridges: N:Q.43
NA.110: 3 residues within 4Å:- Chain P: H.146, H.230, E.234
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:E.234
- 25 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)(Non-functional Binders)
DMU.6: 5 residues within 4Å:- Chain A: M.423
- Chain D: I.86
- Chain K: V.21, W.24, V.25
6 PLIP interactions:5 interactions with chain K, 1 interactions with chain D- Hydrophobic interactions: K:V.21, K:W.24, K:W.24, K:W.24, K:V.25, D:I.86
DMU.21: 7 residues within 4Å:- Chain B: H.26, I.30, L.33, I.34, L.37, I.72, L.75
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:I.30, B:L.33, B:I.34, B:L.37, B:I.72, B:L.75
- Hydrogen bonds: B:H.26
DMU.28: 9 residues within 4Å:- Chain C: N.36, S.37, T.39, I.43
- Chain J: L.38, G.41, G.42, Y.45
- Ligands: DMU.69
8 PLIP interactions:4 interactions with chain J, 4 interactions with chain C- Hydrophobic interactions: J:L.38, J:Y.45, J:Y.45, C:I.43
- Hydrogen bonds: J:Y.45, C:N.36, C:N.36, C:S.37
DMU.29: 5 residues within 4Å:- Chain C: W.32, M.38, L.41
- Chain G: F.69
- Ligands: PGV.8
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain G- Hydrophobic interactions: C:W.32, C:L.41
- Water bridges: G:F.69
DMU.30: 4 residues within 4Å:- Chain C: Y.100, F.249, V.252
- Ligands: CDL.65
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.249, C:F.249, C:F.249, C:V.252
DMU.44: 6 residues within 4Å:- Chain D: L.91, I.94, W.95, H.98
- Chain K: Y.26, I.31
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:W.95
- Salt bridges: D:H.98
DMU.69: 12 residues within 4Å:- Chain A: L.110, L.145
- Chain C: S.27, T.30, M.31, F.35
- Chain J: S.46, Y.48, C.49, L.50, W.52
- Ligands: DMU.28
6 PLIP interactions:3 interactions with chain C, 2 interactions with chain A, 1 interactions with chain J- Hydrophobic interactions: C:T.30, C:F.35, C:F.35, A:L.110, A:L.145
- Hydrogen bonds: J:Y.45
DMU.72: 4 residues within 4Å:- Chain K: V.25, A.28, W.35
- Ligands: DMU.75
3 PLIP interactions:3 interactions with chain K- Hydrophobic interactions: K:V.25, K:A.28, K:W.35
DMU.73: 4 residues within 4Å:- Chain K: A.28, I.33, W.35
- Ligands: DMU.75
5 PLIP interactions:5 interactions with chain K- Hydrophobic interactions: K:W.35, K:W.35, K:W.35
- Hydrogen bonds: K:T.29, K:I.33
DMU.74: 6 residues within 4Å:- Chain D: F.84
- Chain K: A.14, S.15, T.18, F.19
- Ligands: PGV.7
4 PLIP interactions:3 interactions with chain K, 1 interactions with chain D- Hydrophobic interactions: K:F.19, D:F.84
- Hydrogen bonds: K:S.15, K:T.18
DMU.75: 3 residues within 4Å:- Ligands: TGL.45, DMU.72, DMU.73
No protein-ligand interaction detected (PLIP)DMU.76: 10 residues within 4Å:- Chain A: M.117
- Chain J: F.55
- Chain L: S.30, A.34, F.37, R.40, H.41, L.44
- Ligands: TGL.78, EDO.80
7 PLIP interactions:7 interactions with chain L- Hydrophobic interactions: L:A.34
- Hydrogen bonds: L:R.40, L:H.41
- Water bridges: L:R.40, L:R.40
- Salt bridges: L:R.40, L:R.40
DMU.81: 12 residues within 4Å:- Chain A: F.459
- Chain D: L.92, W.95, Y.99
- Chain M: L.27, L.28, A.30, G.31, W.32, L.34, Y.35, H.36
7 PLIP interactions:3 interactions with chain M, 1 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: M:L.27, M:A.30, A:F.459, D:L.92, D:W.95, D:W.95
- Water bridges: M:Y.35
DMU.107: 7 residues within 4Å:- Chain O: H.26, M.29, I.30, L.33, L.37, I.72, L.75
5 PLIP interactions:5 interactions with chain O- Hydrophobic interactions: O:L.33, O:L.37, O:I.72, O:L.75
- Hydrogen bonds: O:H.26
DMU.111: 3 residues within 4Å:- Chain P: W.32, M.38
- Chain T: F.69
3 PLIP interactions:2 interactions with chain P, 1 interactions with chain T- Hydrophobic interactions: P:W.32, P:W.32, T:F.69
DMU.112: 11 residues within 4Å:- Chain P: M.31, N.36, S.37, T.39, I.43
- Chain W: T.37, L.38, G.41, G.42, Y.45
- Ligands: DMU.147
7 PLIP interactions:3 interactions with chain P, 4 interactions with chain W- Hydrogen bonds: P:N.36, P:S.37, P:S.37
- Hydrophobic interactions: W:L.38, W:Y.45, W:Y.45, W:Y.45
DMU.127: 8 residues within 4Å:- Chain Q: L.91, I.94, W.95, H.98
- Chain X: Y.26, Q.30, I.31, G.32
4 PLIP interactions:1 interactions with chain X, 3 interactions with chain Q- Hydrogen bonds: X:Y.26
- Hydrophobic interactions: Q:L.91, Q:I.94
- Salt bridges: Q:H.98
DMU.147: 13 residues within 4Å:- Chain N: L.110, A.114, L.145
- Chain P: S.27, M.31, F.35
- Chain W: Y.45, S.46, Y.48, C.49, L.50, W.52
- Ligands: DMU.112
8 PLIP interactions:
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEA: HEME-A(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 25 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)(Non-functional Binders)