- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 2 x HEA: HEME-A(Non-covalent)
- 1 x CU: COPPER (II) ION(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x CYN: CYANIDE ION(Non-covalent)
- 3 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
TGL.7: 18 residues within 4Å:- Chain A: F.346, V.350, Y.379, N.422, F.426, H.429, F.430, L.433
- Chain B: L.7, G.8, H.24, L.28, V.31, F.32, S.35, S.36, L.39
- Chain I: R.43
18 PLIP interactions:8 interactions with chain B, 8 interactions with chain A, 2 interactions with chain I- Hydrophobic interactions: B:L.7, B:V.31, B:F.32, B:F.32, B:L.39, A:V.350, A:Y.379, A:F.426, A:F.426, A:F.426, A:F.426, A:F.430, A:F.430
- Water bridges: B:G.8, B:F.9, I:R.43
- Salt bridges: B:H.24, I:R.43
TGL.82: 20 residues within 4Å:- Chain A: W.334, M.339, L.342, G.343, F.414, A.415, V.419
- Chain B: L.39, I.42, L.46, T.47
- Chain D: R.70, S.71, E.74, W.75, V.78, M.83, I.86
- Chain I: R.16
- Ligands: DMU.129
15 PLIP interactions:4 interactions with chain D, 7 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: D:V.78, A:W.334, A:W.334, A:W.334, A:L.342, A:A.415, A:V.419, B:L.39, B:I.42, B:L.46, B:T.47
- Hydrogen bonds: D:T.72, D:E.74, D:W.75
- Salt bridges: A:K.411
TGL.133: 27 residues within 4Å:- Chain A: F.2, T.17, L.18, L.21, F.22, W.25, W.81, F.109, L.110, L.113, F.393, F.400, S.401, I.472
- Chain L: N.9, I.10, P.11, F.12, S.13, R.19, M.23, M.24, L.26, F.27, F.28, S.30
- Ligands: EDO.29
19 PLIP interactions:9 interactions with chain A, 10 interactions with chain L- Hydrophobic interactions: A:T.17, A:W.25, A:W.25, A:W.81, A:F.109, A:L.113, A:F.393, A:F.400, A:I.472, L:I.10, L:P.11, L:F.12, L:F.12, L:F.12, L:L.26, L:F.27, L:F.27, L:F.27, L:F.28
- 4 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
PGV.8: 14 residues within 4Å:- Chain A: N.406, T.408, W.409, I.412
- Chain D: T.77, A.81, F.84
- Chain K: F.4, H.5
- Chain M: A.3, P.12, Q.15, A.16, L.19
15 PLIP interactions:3 interactions with chain A, 2 interactions with chain D, 6 interactions with chain M, 4 interactions with chain K- Hydrophobic interactions: A:T.408, A:W.409, A:I.412, D:T.77, D:F.84, M:P.12, M:P.12, M:A.16, M:L.19, K:F.4, K:F.4, K:F.4
- Water bridges: M:A.3, M:A.3, K:F.4
PGV.9: 28 residues within 4Å:- Chain A: F.94, P.95, R.96, M.97, F.148, H.151, L.152, P.200
- Chain C: H.7, V.9, G.18, A.22, T.26, N.48, T.51, M.52, W.55, W.56, V.59, E.62, H.69, L.77, G.80, F.84, S.87, E.88, F.91
- Ligands: PEK.57
19 PLIP interactions:8 interactions with chain A, 11 interactions with chain C- Hydrophobic interactions: A:F.148, A:L.152, A:P.200, C:A.22, C:T.26, C:T.51, C:W.55, C:W.55, C:W.55, C:W.56, C:F.84, C:F.91
- Hydrogen bonds: A:R.96, A:R.96, A:M.97, C:W.55
- Water bridges: A:A.93, C:M.81
- Salt bridges: A:R.96
PGV.59: 26 residues within 4Å:- Chain C: M.49, M.52, W.56, V.59, I.60, S.63, T.64, H.69, M.81, F.84, E.88, F.91, F.201, H.205, I.208, T.211, F.212, R.219, H.224, F.225, T.226, H.229, H.230, F.231, G.232
- Ligands: CDL.61
25 PLIP interactions:23 interactions with chain C, 2 interactions with chain F- Hydrophobic interactions: C:W.56, C:W.56, C:W.56, C:W.56, C:W.56, C:I.60, C:F.84, C:F.91, C:F.201, C:I.208, C:F.212, C:F.212
- Hydrogen bonds: C:S.63, C:R.219, C:F.231, C:G.232
- Water bridges: C:S.63, C:R.219, C:H.229, C:H.229, F:Q.12, F:E.17
- Salt bridges: C:R.219, C:R.219, C:H.229
PGV.60: 15 residues within 4Å:- Chain A: F.237, D.298
- Chain C: V.89, T.93, W.97, Y.100, H.101, A.105
- Chain H: N.16, N.18
- Ligands: EDO.22, EDO.23, EDO.34, CHD.55, EDO.78
11 PLIP interactions:4 interactions with chain A, 5 interactions with chain C, 2 interactions with chain H- Hydrophobic interactions: A:F.237, C:V.89, C:T.93, C:W.97, C:W.97, C:W.97
- Hydrogen bonds: A:D.298, H:N.16
- Water bridges: A:D.298, A:D.298, H:N.18
- 10 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
DMU.10: 4 residues within 4Å:- Chain K: V.25, A.28, T.29
- Ligands: DMU.130
3 PLIP interactions:3 interactions with chain K- Hydrophobic interactions: K:V.25, K:A.28, K:T.29
DMU.38: 8 residues within 4Å:- Chain B: H.26, M.29, I.30, L.33, I.34, L.37, I.72
- Chain I: K.36
9 PLIP interactions:6 interactions with chain B, 3 interactions with chain I- Hydrophobic interactions: B:L.33, B:I.34, B:L.37
- Water bridges: B:H.26, B:H.26
- Salt bridges: B:H.26
- Hydrogen bonds: I:K.36, I:K.36, I:K.36
DMU.63: 11 residues within 4Å:- Chain C: M.31, N.36, S.37, T.39, I.43
- Chain J: T.37, L.38, G.41, G.42, Y.45
- Ligands: DMU.64
9 PLIP interactions:3 interactions with chain C, 6 interactions with chain J- Hydrophobic interactions: C:I.43, J:L.38, J:Y.45, J:Y.45, J:Y.45
- Hydrogen bonds: C:S.37, C:S.37
- Water bridges: J:Y.45, J:Y.45
DMU.64: 12 residues within 4Å:- Chain A: L.110, A.114
- Chain C: S.27, M.31, F.35
- Chain J: Y.45, S.46, Y.48, C.49, L.50, W.52
- Ligands: DMU.63
6 PLIP interactions:3 interactions with chain J, 1 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: J:L.50, C:M.31, A:L.110, A:A.114
- Hydrogen bonds: J:Y.45, J:Y.45
DMU.112: 7 residues within 4Å:- Chain C: L.29, W.32, M.38, L.41
- Chain G: W.62, G.63
- Ligands: PEK.57
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain G- Hydrophobic interactions: C:L.29, C:W.32, C:L.41
- Hydrogen bonds: G:G.63
DMU.129: 6 residues within 4Å:- Chain A: M.423
- Chain D: I.86
- Chain K: V.21, W.24, V.25
- Ligands: TGL.82
6 PLIP interactions:5 interactions with chain K, 1 interactions with chain D- Hydrophobic interactions: K:V.21, K:W.24, K:W.24, K:W.24, K:V.25, D:I.86
DMU.130: 6 residues within 4Å:- Chain A: M.449, I.453
- Chain K: A.28, T.29, W.35
- Ligands: DMU.10
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain K- Hydrophobic interactions: A:I.453
- Water bridges: K:E.34, K:E.34
DMU.131: 8 residues within 4Å:- Chain D: L.91, I.94, W.95, H.98
- Chain K: Y.26, Q.30, I.31, G.32
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain K- Hydrophobic interactions: D:L.91, D:W.95, D:H.98
- Salt bridges: D:H.98
- Hydrogen bonds: K:Y.26
- Water bridges: K:G.32
DMU.132: 3 residues within 4Å:- Chain K: T.18, F.19, A.22
3 PLIP interactions:3 interactions with chain K- Hydrophobic interactions: K:F.19, K:F.19, K:A.22
DMU.141: 13 residues within 4Å:- Chain A: L.35, F.459
- Chain D: L.92, W.95, Y.99
- Chain M: L.27, L.28, A.30, G.31, W.32, L.34, Y.35, H.36
11 PLIP interactions:5 interactions with chain M, 3 interactions with chain D, 3 interactions with chain A- Hydrophobic interactions: M:L.27, M:L.27, M:A.30, M:L.34, D:L.92, D:W.95, A:L.35, A:F.459, A:F.459
- Water bridges: M:H.36, D:Y.99
- 107 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.11: 8 residues within 4Å:- Chain A: L.483, T.484, V.485, T.488, W.494, G.497, C.498
- Chain D: Y.8
Ligand excluded by PLIPEDO.12: 7 residues within 4Å:- Chain A: Y.260, Y.261, V.394, H.395, P.398, W.494
- Chain M: I.1
Ligand excluded by PLIPEDO.13: 5 residues within 4Å:- Chain A: K.265, T.489
- Chain F: I.70, P.83, S.84
Ligand excluded by PLIPEDO.14: 2 residues within 4Å:- Chain A: L.7
- Ligands: EDO.25
Ligand excluded by PLIPEDO.15: 4 residues within 4Å:- Chain A: P.174, A.175, S.177
- Ligands: EDO.20
Ligand excluded by PLIPEDO.16: 7 residues within 4Å:- Chain A: G.269, Y.270, M.271, G.272
- Chain B: A.58, E.62
- Ligands: EDO.40
Ligand excluded by PLIPEDO.17: 6 residues within 4Å:- Chain A: H.256, T.259, K.265, T.490, N.491
- Ligands: EDO.102
Ligand excluded by PLIPEDO.18: 9 residues within 4Å:- Chain A: P.174, T.509, Y.510, V.511
- Chain F: N.32, L.34, P.36, R.56
- Ligands: EDO.105
Ligand excluded by PLIPEDO.19: 5 residues within 4Å:- Chain A: C.498, P.499
- Chain D: Y.8
- Chain L: P.6
- Ligands: EDO.135
Ligand excluded by PLIPEDO.20: 6 residues within 4Å:- Chain A: K.172, P.173, P.174, M.176
- Ligands: EDO.15, EDO.28
Ligand excluded by PLIPEDO.21: 8 residues within 4Å:- Chain A: Y.19, M.71, P.72, I.75, G.76, L.105, S.157, L.195
Ligand excluded by PLIPEDO.22: 5 residues within 4Å:- Chain A: I.229, H.233
- Chain C: H.101
- Ligands: CHD.55, PGV.60
Ligand excluded by PLIPEDO.23: 2 residues within 4Å:- Ligands: CHD.55, PGV.60
Ligand excluded by PLIPEDO.24: 5 residues within 4Å:- Chain A: L.33, A.60, S.116
- Chain L: I.38, V.39
Ligand excluded by PLIPEDO.25: 2 residues within 4Å:- Chain A: L.110
- Ligands: EDO.14
Ligand excluded by PLIPEDO.26: 4 residues within 4Å:- Chain A: Q.52, A.137, H.138, A.139
Ligand excluded by PLIPEDO.27: 1 residues within 4Å:- Chain G: R.56
Ligand excluded by PLIPEDO.28: 6 residues within 4Å:- Chain A: N.170, K.172, P.173, P.174
- Chain C: Y.6
- Ligands: EDO.20
Ligand excluded by PLIPEDO.29: 2 residues within 4Å:- Chain A: F.2
- Ligands: TGL.133
Ligand excluded by PLIPEDO.30: 4 residues within 4Å:- Chain A: H.503, E.506
- Chain C: H.1
- Chain L: H.1
Ligand excluded by PLIPEDO.31: 7 residues within 4Å:- Chain A: E.266, P.267, G.269, Y.270
- Chain F: S.67
- Ligands: EDO.50, EDO.101
Ligand excluded by PLIPEDO.32: 9 residues within 4Å:- Chain A: R.5, N.11, K.13, D.14, W.81, P.499, P.500, Y.502
- Chain L: N.9
Ligand excluded by PLIPEDO.33: 7 residues within 4Å:- Chain A: K.265, E.266
- Chain B: T.55
- Chain F: N.66, T.68, S.84
- Ligands: EDO.101
Ligand excluded by PLIPEDO.34: 3 residues within 4Å:- Chain A: W.288, Y.304
- Ligands: PGV.60
Ligand excluded by PLIPEDO.35: 7 residues within 4Å:- Chain A: T.10, N.11, D.91, Y.502, H.503
- Chain C: V.9
- Ligands: EDO.140
Ligand excluded by PLIPEDO.39: 3 residues within 4Å:- Chain B: T.125, L.135, F.206
Ligand excluded by PLIPEDO.40: 2 residues within 4Å:- Chain B: Q.59
- Ligands: EDO.16
Ligand excluded by PLIPEDO.41: 3 residues within 4Å:- Chain A: L.136, A.137
- Chain B: Q.103
Ligand excluded by PLIPEDO.42: 4 residues within 4Å:- Chain B: E.157, P.176
- Ligands: EDO.77, EDO.118
Ligand excluded by PLIPEDO.43: 3 residues within 4Å:- Chain B: S.36, L.39, S.43
Ligand excluded by PLIPEDO.44: 4 residues within 4Å:- Chain B: Y.40
- Chain I: A.24, V.27, S.28
Ligand excluded by PLIPEDO.45: 7 residues within 4Å:- Chain A: Y.447
- Chain B: M.1, A.2, Q.10, L.136, P.166, Y.193
Ligand excluded by PLIPEDO.46: 4 residues within 4Å:- Chain B: D.88, I.90
- Chain H: F.10, P.15
Ligand excluded by PLIPEDO.47: 3 residues within 4Å:- Chain B: H.102, E.157, D.158
Ligand excluded by PLIPEDO.48: 3 residues within 4Å:- Chain B: S.117, F.118, D.119
Ligand excluded by PLIPEDO.49: 8 residues within 4Å:- Chain B: S.14, P.15, I.16, L.168, T.183, L.184, M.185
- Ligands: EDO.51
Ligand excluded by PLIPEDO.50: 6 residues within 4Å:- Chain B: T.55, M.56, D.57, A.58
- Ligands: EDO.31, EDO.101
Ligand excluded by PLIPEDO.51: 5 residues within 4Å:- Chain B: M.87, L.170, T.182, T.183
- Ligands: EDO.49
Ligand excluded by PLIPEDO.52: 7 residues within 4Å:- Chain B: T.111, D.112, Y.113, E.114, D.115
- Chain H: R.51, K.55
Ligand excluded by PLIPEDO.53: 5 residues within 4Å:- Chain B: E.132, R.141
- Chain D: R.119
- Chain I: G.67, I.68
Ligand excluded by PLIPEDO.54: 9 residues within 4Å:- Chain A: D.445, A.446
- Chain B: M.1, A.2, Y.3, P.4, L.133
- Chain D: Q.116, M.120
Ligand excluded by PLIPEDO.65: 8 residues within 4Å:- Chain C: W.144, S.148, H.156
- Chain F: A.1, S.2
- Chain G: A.13, R.14, R.17
Ligand excluded by PLIPEDO.66: 3 residues within 4Å:- Chain C: G.139, H.241
- Chain G: W.16
Ligand excluded by PLIPEDO.67: 2 residues within 4Å:- Chain C: H.241, V.245
Ligand excluded by PLIPEDO.68: 4 residues within 4Å:- Chain C: H.241
- Ligands: PEK.56, EDO.73, EDO.80
Ligand excluded by PLIPEDO.69: 3 residues within 4Å:- Chain C: I.85, I.86
- Ligands: PEK.56
Ligand excluded by PLIPEDO.70: 4 residues within 4Å:- Chain C: H.147
- Chain G: T.11, W.16
- Ligands: EDO.80
Ligand excluded by PLIPEDO.71: 2 residues within 4Å:- Chain C: F.249
- Ligands: CDL.111
Ligand excluded by PLIPEDO.72: 4 residues within 4Å:- Chain C: P.71, Q.74, K.75, R.78
Ligand excluded by PLIPEDO.73: 4 residues within 4Å:- Chain C: E.234, W.238
- Ligands: PEK.56, EDO.68
Ligand excluded by PLIPEDO.74: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPEDO.75: 3 residues within 4Å:- Chain C: M.150, S.227, N.228
Ligand excluded by PLIPEDO.76: 3 residues within 4Å:- Chain C: Q.2, H.68
- Ligands: EDO.107
Ligand excluded by PLIPEDO.77: 7 residues within 4Å:- Chain A: P.222, A.223
- Chain B: G.177
- Chain C: E.109
- Chain H: W.62
- Ligands: EDO.42, EDO.118
Ligand excluded by PLIPEDO.78: 4 residues within 4Å:- Chain C: T.93, W.97
- Ligands: PEK.56, PGV.60
Ligand excluded by PLIPEDO.79: 3 residues within 4Å:- Chain A: E.119
- Chain C: H.34, F.35
Ligand excluded by PLIPEDO.80: 6 residues within 4Å:- Chain C: T.143, H.146, H.147, H.241
- Ligands: EDO.68, EDO.70
Ligand excluded by PLIPEDO.81: 4 residues within 4Å:- Chain C: R.154, F.223
- Chain F: G.5
- Ligands: CHD.62
Ligand excluded by PLIPEDO.83: 3 residues within 4Å:- Chain D: D.122, Y.137
- Chain I: E.62
Ligand excluded by PLIPEDO.84: 3 residues within 4Å:- Chain D: E.141, W.142
- Chain K: G.41
Ligand excluded by PLIPEDO.85: 6 residues within 4Å:- Chain D: P.22, D.23, V.24, A.25, K.60
- Chain E: R.26
Ligand excluded by PLIPEDO.86: 4 residues within 4Å:- Chain D: K.118, D.122, W.135
- Chain K: P.45
Ligand excluded by PLIPEDO.87: 4 residues within 4Å:- Chain D: P.127, I.128
- Chain I: A.46, F.50
Ligand excluded by PLIPEDO.88: 4 residues within 4Å:- Chain D: Y.13, V.14, D.15
- Ligands: EDO.89
Ligand excluded by PLIPEDO.89: 4 residues within 4Å:- Chain D: Y.13, A.25, H.26
- Ligands: EDO.88
Ligand excluded by PLIPEDO.90: 7 residues within 4Å:- Chain A: L.495
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 2 x HEA: HEME-A(Non-covalent)
- 1 x CU: COPPER (II) ION(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x CYN: CYANIDE ION(Non-covalent)
- 3 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
- 4 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
- 10 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
- 107 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)