SMTL ID : 7vuw.1 (1 other biounit)

Bovine heart cytochrome c oxidase in the cyanide-bound fully oxidized state at 50 K

HEA.1: 38 residues within 4Å: Chain A: A.24, G.27, M.28, T.31, S.34, I.37, R.38, Y.54, V.58, H.61, A.62, M.65, I.66, M.69, V.70, I.73, G.125, W.126, Y.371, V.374, F.377, H.378, L.381, S.382, V.386, M.390, F.393, M.417, T.424, F.425, Q.428, R.438, R.439, Y.440, S.458, V.465, M.468 Ligands: EDO.37 37 PLIP interactions: 37 interactions with chain A, Hydrophobic interactions: A:A.24, A:I.37, A:R.38, A:V.58, A:V.58, A:A.62, A:M.65, A:I.66, A:V.70, A:I.73, A:V.374, A:F.377, A:L.381, A:L.381, A:V.386, A:V.386, A:F.393, A:F.393, A:T.424 Hydrogen bonds: A:R.38, A:Y.54, A:W.126, A:Y.371, A:S.382, A:Q.428, A:R.439, A:Y.440 Water bridges: A:R.438, A:R.438, A:S.461 Salt bridges: A:R.438, A:R.439 pi-Stacking: A:H.61, A:H.378, A:F.425 Metal complexes: A:H.61, A:H.378 HEA.2: 34 residues within 4Å: Chain A: W.126, W.236, V.243, Y.244, I.247, H.290, H.291, T.309, I.312, A.313, T.316, G.317, V.320, F.348, T.349, G.352, L.353, G.355, I.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438 Chain B: I.34, P.69, I.72, L.73 Ligands: CYN.6 37 PLIP interactions: 32 interactions with chain A, 5 interactions with chain B, Hydrophobic interactions: A:W.236, A:V.243, A:V.243, A:V.243, A:I.247, A:I.247, A:T.309, A:T.316, A:V.320, A:F.348, A:T.349, A:L.353, A:I.356, A:I.356, A:V.373, A:F.377, A:F.377, A:V.380, A:L.381, A:L.381, B:I.34, B:I.34, B:P.69, B:I.72, B:L.73 Hydrogen bonds: A:W.126, A:Y.244 Water bridges: A:H.291, A:T.316, A:D.369, A:D.369, A:R.438 Salt bridges: A:H.368, A:R.438, A:R.439 pi-Cation interactions: A:H.240 Metal complexes: A:H.376

CU.3: 4 residues within 4Å: Chain A: H.240, H.290, H.291 Ligands: CYN.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.240, A:H.290, A:H.291

MG.4: 4 residues within 4Å: Chain A: H.368, D.369 Chain B: S.197, E.198 6 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:H.368, A:D.369, B:E.198, H2O.7, H2O.12, H2O.13

NA.5: 5 residues within 4Å: Chain A: E.40, Q.43, G.45, S.441, D.442 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.441 Water bridges: A:Q.43

CYN.6: 6 residues within 4Å: Chain A: H.240, V.243, H.290, H.291 Ligands: HEA.2, CU.3 No protein-ligand interaction detected (PLIP)

PGV.7: 12 residues within 4Å: Chain A: N.406, T.408, W.409 Chain D: A.81, F.84 Chain K: F.4, H.5 Chain M: P.12, Q.15, A.16 Ligands: EDO.35, EDO.169 17 PLIP interactions: 5 interactions with chain M, 5 interactions with chain A, 3 interactions with chain K, 4 interactions with chain D Hydrophobic interactions: M:P.12, M:Q.15, M:A.16, A:T.408, A:W.409, A:W.409, A:W.409, K:F.4, K:F.4, D:A.81, D:F.84, D:F.84, D:F.84 Water bridges: M:A.3, M:K.4 Hydrogen bonds: A:T.408 Salt bridges: K:H.5 PGV.8: 28 residues within 4Å: Chain A: F.94, P.95, R.96, M.97, F.148, H.151, L.152, I.158, P.200 Chain C: H.7, V.9, G.18, A.22, T.26, N.48, T.51, M.52, W.55, W.56, V.59, E.62, H.69, L.77, G.80, F.84, S.87, E.88 Ligands: PEK.64 19 PLIP interactions: 11 interactions with chain C, 8 interactions with chain A Hydrophobic interactions: C:A.22, C:T.26, C:T.51, C:W.55, C:W.55, C:W.55, C:W.56, C:F.84, C:F.84, C:F.84, A:F.148, A:L.152, A:I.158, A:P.200 Hydrogen bonds: C:W.55, A:R.96, A:R.96, A:M.97 Salt bridges: A:R.96 PGV.66: 23 residues within 4Å: Chain C: M.49, M.52, W.56, V.59, I.60, S.63, T.64, H.69, M.81, F.84, H.205, I.208, T.211, F.212, R.219, H.224, F.225, T.226, H.229, H.230, F.231, G.232 Ligands: CDL.68 27 PLIP interactions: 25 interactions with chain C, 2 interactions with chain F Hydrophobic interactions: C:W.56, C:W.56, C:W.56, C:W.56, C:W.56, C:W.56, C:I.60, C:F.84, C:I.208, C:I.208, C:T.211, C:F.212, C:F.212, C:F.212 Hydrogen bonds: C:S.63, C:R.219, C:F.231, C:G.232 Water bridges: C:S.63, C:R.219, C:H.229, C:H.229, F:Q.12, F:E.17 Salt bridges: C:R.219, C:R.219, C:H.229 PGV.67: 14 residues within 4Å: Chain A: F.237, D.298 Chain C: T.93, W.97, Y.100, H.101, L.104, A.105 Chain H: N.18 Ligands: EDO.16, CHD.62, EDO.80, EDO.137, EDO.139 8 PLIP interactions: 5 interactions with chain C, 2 interactions with chain A, 1 interactions with chain H Hydrophobic interactions: C:T.93, C:W.97, C:W.97, C:L.104, A:F.237, A:F.237 Salt bridges: C:H.101 Hydrogen bonds: H:N.18

EDO.9: 6 residues within 4Å: Chain A: D.221, P.222, A.223 Ligands: EDO.33, EDO.43, EDO.72 Ligand excluded by PLIP EDO.10: 1 residues within 4Å: Chain A: F.2 Ligand excluded by PLIP EDO.11: 8 residues within 4Å: Chain A: Y.260, Y.261, V.394, H.395, P.398, W.494 Chain M: I.1 Ligands: EDO.172 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: K.265, T.489 Chain F: I.70, P.83, S.84 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: H.256, T.259, K.265, T.490, N.491 Ligands: EDO.124 Ligand excluded by PLIP EDO.14: 7 residues within 4Å: Chain A: G.269, Y.270, M.271, G.272 Chain B: A.58, E.62 Ligands: CHD.42 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: L.33, A.60, S.116 Chain L: I.38, V.39 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain A: Y.304 Ligands: PGV.67 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain A: Q.52, A.137, H.138, A.139 Ligand excluded by PLIP EDO.18: 7 residues within 4Å: Chain A: E.507 Chain C: T.3 Chain F: P.30, N.32, P.50, R.56, H.94 Ligand excluded by PLIP EDO.19: 10 residues within 4Å: Chain A: R.5, N.11, K.13, D.14, W.81, P.499, P.500, Y.502 Chain L: N.9 Ligands: EDO.165 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain A: F.505, E.507, P.508, T.509 Chain F: R.56, I.57, W.73 Ligand excluded by PLIP EDO.21: 7 residues within 4Å: Chain A: K.265, E.266 Chain B: T.55 Chain F: N.66, T.68, I.70, S.84 Ligand excluded by PLIP EDO.22: 3 residues within 4Å: Chain A: P.501, H.503, E.506 Ligand excluded by PLIP EDO.23: 7 residues within 4Å: Chain A: G.45, T.46 Ligands: EDO.27, EDO.47, EDO.58, EDO.96, EDO.168 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain A: W.103 Ligands: EDO.79, TGL.156 Ligand excluded by PLIP EDO.25: 4 residues within 4Å: Chain A: F.418, N.422, M.423 Ligands: TGL.38 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain A: H.328 Chain I: A.14, L.17 Ligands: PSC.41 Ligand excluded by PLIP EDO.27: 10 residues within 4Å: Chain A: Q.43, P.44, G.45, T.46, L.47 Chain D: P.103, I.104, P.105 Ligands: EDO.23, EDO.96 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain A: P.106, P.107, L.110 Chain C: L.20 Ligands: EDO.79 Ligand excluded by PLIP EDO.29: 7 residues within 4Å: Chain A: Y.19, M.71, P.72, S.101, L.105, S.156, S.157 Ligand excluded by PLIP EDO.30: 5 residues within 4Å: Chain A: N.170, K.172, P.173, P.174, M.176 Ligand excluded by PLIP EDO.31: 5 residues within 4Å: Chain A: W.334, S.335, D.407, K.411 Ligands: EDO.172 Ligand excluded by PLIP EDO.32: 5 residues within 4Å: Chain A: V.485, D.486, L.487, T.488, T.489 Ligand excluded by PLIP EDO.33: 4 residues within 4Å: Chain A: P.131, D.221, P.222 Ligands: EDO.9 Ligand excluded by PLIP EDO.34: 3 residues within 4Å: Chain A: L.136, A.137 Chain B: Q.103 Ligand excluded by PLIP EDO.35: 6 residues within 4Å: Chain A: T.404, D.407 Chain M: I.1, A.3 Ligands: PGV.7, EDO.172 Ligand excluded by PLIP EDO.36: 6 residues within 4Å: Chain A: L.483, V.485, W.494, G.497, C.498 Chain D: Y.8 Ligand excluded by PLIP EDO.37: 7 residues within 4Å: Chain A: M.390, H.413, M.417, A.464, V.465, M.468 Ligands: HEA.1 Ligand excluded by PLIP EDO.43: 5 residues within 4Å: Chain B: E.157, P.176 Ligands: EDO.9, EDO.72, EDO.138 Ligand excluded by PLIP EDO.44: 3 residues within 4Å: Chain B: H.102, E.157, D.158 Ligand excluded by PLIP EDO.45: 7 residues within 4Å: Chain A: Y.447 Chain B: M.1, A.2, Q.10, L.136, P.166, Y.193 Ligand excluded by PLIP EDO.46: 5 residues within 4Å: Chain B: P.15, E.18, M.185, S.187 Chain I: Y.51 Ligand excluded by PLIP EDO.47: 4 residues within 4Å: Chain B: T.125, L.135 Ligands: EDO.23, EDO.58 Ligand excluded by PLIP EDO.48: 5 residues within 4Å: Chain B: M.87, L.170, T.182, T.183 Ligands: EDO.59 Ligand excluded by PLIP EDO.49: 7 residues within 4Å: Chain B: Y.3, Q.6, L.7, G.8, F.9 Ligands: TGL.38, EDO.98 Ligand excluded by PLIP EDO.50: 6 residues within 4Å: Chain B: N.92, P.93 Chain H: Q.6, T.7, A.8, P.9 Ligand excluded by PLIP EDO.51: 4 residues within 4Å: Chain B: W.104, M.122, N.203, F.206 Ligand excluded by PLIP EDO.52: 7 residues within 4Å: Chain B: T.111, D.112, Y.113, E.114, D.115 Chain H: R.52, K.55 Ligand excluded by PLIP EDO.53: 8 residues within 4Å: Chain B: S.94, L.95, Y.113, M.148, L.216, F.219 Chain H: Q.6 Ligands: EDO.54 Ligand excluded by PLIP EDO.54: 5 residues within 4Å: Chain B: Y.113, F.219, E.220, S.223 Ligands: EDO.53 Ligand excluded by PLIP EDO.55: 4 residues within 4Å: Chain B: S.36, L.39, Y.40 Ligands: TGL.38 Ligand excluded by PLIP EDO.56: 4 residues within 4Å: Chain B: T.63, T.66, I.67 Ligands: CHD.42 Ligand excluded by PLIP EDO.57: 4 residues within 4Å: Chain B: Y.40, S.43, T.47 Ligands: TGL.39 Ligand excluded by PLIP EDO.58: 6 residues within 4Å: Chain B: T.125, R.134 Chain D: P.105 Ligands: EDO.23, EDO.47, EDO.96 Ligand excluded by PLIP EDO.59: 8 residues within 4Å: Chain B: S.14, P.15, I.16, L.168, T.183, L.184, M.185 Ligands: EDO.48 Ligand excluded by PLIP EDO.60: 2 residues within 4Å: Chain B: E.147 Ligands: EDO.61 Ligand excluded by PLIP EDO.61: 5 residues within 4Å: Chain B: M.146, E.147, P.215, L.216 Ligands: EDO.60 Ligand excluded by PLIP EDO.72: 8 residues within 4Å: Chain A: P.222 Chain B: G.177 Chain C: E.109 Chain H: W.62 Ligands: EDO.9, EDO.43, EDO.87, EDO.138 Ligand excluded by PLIP EDO.73: 3 residues within 4Å: Chain C: S.103, W.114, W.257 Ligand excluded by PLIP EDO.74: 5 residues within 4Å: Chain C: L.136, G.139, T.143 Chain G: W.16 Ligands: EDO.84 Ligand excluded by PLIP EDO.75: 2 residues within 4Å: Chain C: F.249 Ligands: CDL.131 Ligand excluded by PLIP EDO.76: 4 residues within 4Å: Chain C: L.125, Y.251, W.256 Ligands: CDL.131 Ligand excluded by PLIP EDO.77: 3 residues within 4Å: Chain C: H.241 Ligands: PEK.63, EDO.83 Ligand excluded by PLIP EDO.78: 5 residues within 4Å: Chain C: N.10, Q.66, H.68 Ligands: EDO.85, EDO.149 Ligand excluded by PLIP EDO.79: 3 residues within 4Å: Chain A: W.103 Ligands: EDO.24, EDO.28 Ligand excluded by PLIP EDO.80: 4 residues within 4Å: Chain C: T.93, W.97 Ligands: PEK.63, PGV.67 Ligand excluded by PLIP EDO.81: 3 residues within 4Å: Chain C: H.147 Chain G: T.11, W.16 Ligand excluded by PLIP EDO.82: 5 residues within 4Å: Chain C: H.1, Q.2, H.68 Chain F: L.16 Ligands: EDO.85 Ligand excluded by PLIP EDO.83: 4 residues within 4Å: Chain C: E.234, W.238 Ligands: PEK.63, EDO.77 Ligand excluded by PLIP EDO.84: 3 residues within 4Å: Chain C: D.244, V.245 Ligands: EDO.74 Ligand excluded by PLIP EDO.85: 5 residues within 4Å: Chain C: Q.66, H.68 Chain J: Q.13 Ligands: EDO.78, EDO.82 Ligand excluded by PLIP EDO.86: 3 residues within 4Å: Chain C: P.71, A.72 Chain F: I.33 Ligand excluded by PLIP EDO.87: 6 residues within 4Å: Chain B: G.177 Chain C: E.109 Chain H: W.62, W.66 Ligands: EDO.72, EDO.138 Ligand excluded by PLIP EDO.88: 4 residues within 4Å: Chain D: I.94, H.98, Y.99 Ligands: EDO.94 Ligand excluded by PLIP EDO.89: 4 residues within 4Å: Chain A: I.332, W.334 Chain D: R.70 Ligands: TGL.39 Ligand excluded by PLIP EDO.90: 6 residues within 4Å: Chain B: P.130 Chain D: E.109, E.111, W.112, K.115 Ligands: EDO.91 Ligand excluded by PLIP EDO.91: 3 residues within 4Å: Chain D: E.111, K.115 Ligands: EDO.90 Ligand excluded by PLIP EDO.92: 6 residues within 4Å: Chain D: P.22, D.23, V.24, A.25, K.60 Chain E: R.26 Ligand excluded by PLIP EDO.93: 6 residues within 4Å: Chain D: K.118, L.121, D.122, W.135 Chain K: P.45 Ligands: EDO.106 Ligand excluded by PLIP EDO.94: 2 residues within 4Å: Chain D: L.91 Ligands: EDO.88 Ligand excluded by PLIP EDO.95: 8 residues within 4Å: Chain D: K.124, P.127, S.132, A.133, Y.137 Chain I: F.50 Ligands: EDO.143, EDO.146 Ligand excluded by PLIP EDO.96: 6 residues within 4Å: Chain D: P.103, I.104, P.105 Ligands: EDO.23, EDO.27, EDO.58 Ligand excluded by PLIP EDO.97: 6 residues within 4Å: Chain D: F.84, F.85, F.88 Chain M: S.20, F.23 Ligands: EDO.171 Ligand excluded by PLIP EDO.98: 5 residues within 4Å: Chain D: Q.129, K.134 Chain I: R.43 Ligands: TGL.38, EDO.49 Ligand excluded by PLIP EDO.99: 3 residues within 4Å: Chain D: R.58, E.67 Ligands: EDO.100 Ligand excluded by PLIP EDO.100: 1 residues within 4Å: Ligands: EDO.99 Ligand excluded by PLIP EDO.101: 3 residues within 4Å: Chain D: D.15, R.16, M.68 Ligand excluded by PLIP EDO.102: 5 residues within 4Å: Chain D: L.37, D.51, E.52, E.55 Ligands: EDO.105 Ligand excluded by PLIP EDO.103: 6 residues within 4Å: Chain D: A.25, V.27, K.28, L.30, K.38, L.59 Ligand excluded by PLIP EDO.104: 4 residues within 4Å: Chain D: K.42, A.43, S.44 Chain E: R.52 Ligand excluded by PLIP EDO.105: 4 residues within 4Å: Chain D: S.33, Q.34, E.55 Ligands: EDO.102 Ligand excluded by PLIP EDO.106: 5 residues within 4Å: Chain D: D.122, K.124, Y.137 Chain I: E.62 Ligands: EDO.93 Ligand excluded by PLIP EDO.107: 5 residues within 4Å: Chain D: Y.13, V.14, D.15, K.62 Chain M: T.2 Ligand excluded by PLIP EDO.108: 3 residues within 4Å: Chain D: K.134 Chain K: S.38, V.40 Ligand excluded by PLIP EDO.109: 4 residues within 4Å: Chain E: Y.14, K.17, I.20, E.24 Ligand excluded by PLIP EDO.110: 3 residues within 4Å: Chain E: R.49, R.52, R.53 Ligand excluded by PLIP EDO.111: 5 residues within 4Å: Chain D: K.53 Chain E: N.90, G.93, I.94, S.95 Ligand excluded by PLIP EDO.112: 5 residues within 4Å: Chain E: D.19, I.20, D.21, L.54 Ligands: EDO.113 Ligand excluded by PLIP EDO.113: 5 residues within 4Å: Chain E: K.17, D.19, D.21, E.24 Ligands: EDO.112 Ligand excluded by PLIP EDO.114: 4 residues within 4Å: Chain E: R.10, W.11, Y.14 Ligands: EDO.121 Ligand excluded by PLIP EDO.115: 4 residues within 4Å: Chain E: Y.78, P.79, I.82, E.98 Ligand excluded by PLIP EDO.116: 2 residues within 4Å: Chain E: E.98, E.99 Ligand excluded by PLIP EDO.117: 7 residues within 4Å: Chain D: Y.19, D.23 Chain E: W.23, R.26, K.27, N.30 Chain F: P.83 Ligand excluded by PLIP EDO.118: 6 residues within 4Å: Chain B: T.51 Chain D: R.17, D.18 Chain E: V.66, D.69, K.70 Ligand excluded by PLIP EDO.119: 3 residues within 4Å: Chain E: R.53, L.54, N.55 Ligand excluded by PLIP EDO.120: 3 residues within 4Å: Chain E: N.16, P.18, R.53 Ligand excluded by PLIP EDO.121: 5 residues within 4Å: Chain E: W.11, Y.14, K.27, T.31 Ligands: EDO.114 Ligand excluded by PLIP EDO.123: 4 residues within 4Å: Chain C: H.229 Chain F: D.9, E.17 Ligands: EDO.129 Ligand excluded by PLIP EDO.124: 7 residues within 4Å: Chain A: T.489, T.490 Chain F: S.67, T.68, V.69, W.71 Ligands: EDO.13 Ligand excluded by PLIP EDO.125: 6 residues within 4Å: Chain A: Y.510 Chain F: P.36, K.37, T.39, N.47, L.48 Ligand excluded by PLIP EDO.126: 4 residues within 4Å: Chain F: F.72, Q.80, R.81, P.83 Ligand excluded by PLIP EDO.127: 6 residues within 4Å: Chain F: T.8, D.9, E.10, M.21, R.25 Ligands: EDO.129 Ligand excluded by PLIP EDO.128: 6 residues within 4Å: Chain F: V.20, A.24, Q.28, D.29, I.33, L.34 Ligand excluded by PLIP EDO.129: 5 residues within 4Å: Chain C: N.228 Chain F: D.9, M.21 Ligands: EDO.123, EDO.127 Ligand excluded by PLIP EDO.130: 8 residues within 4Å: Chain A: P.174, T.509, Y.510, V.511 Chain F: N.32, L.34, P.36, R.56 Ligand excluded by PLIP EDO.133: 6 residues within 4Å: Chain C: G.118 Chain G: A.46, F.47, I.48, L.53, R.54 Ligand excluded by PLIP EDO.134: 6 residues within 4Å: Chain C: W.32, F.33 Chain G: K.58, P.59, F.60, S.61 Ligand excluded by PLIP EDO.135: 2 residues within 4Å: Chain G: A.1, A.3 Ligand excluded by PLIP EDO.136: 5 residues within 4Å: Chain C: T.117 Chain G: Y.50 Chain H: F.75, P.76, G.77 Ligand excluded by PLIP EDO.137: 6 residues within 4Å: Chain H: F.14, P.15, N.16, N.18, R.21 Ligands: PGV.67 Ligand excluded by PLIP EDO.138: 5 residues within 4Å: Chain H: S.61, T.65 Ligands: EDO.43, EDO.72, EDO.87 Ligand excluded by PLIP EDO.139: 7 residues within 4Å: Chain A: D.227 Chain B: G.177, R.178 Chain C: T.107 Chain H: N.18, T.20 Ligands: PGV.67 Ligand excluded by PLIP EDO.141: 2 residues within 4Å: Chain I: Q.70, S.71 Ligand excluded by PLIP EDO.142: 5 residues within 4Å: Chain I: Y.54, D.55, D.59, E.62 Ligands: EDO.146 Ligand excluded by PLIP