SMTL ID : 5iy5.1 (1 other biounit)

Electron transfer complex of cytochrome c and cytochrome c oxidase at 2.0 angstrom resolution

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x CU: COPPER (II) ION(Non-covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
2 x NA: SODIUM ION(Non-functional Binders)
2 x HEA: HEME-A(Covalent)(Non-covalent)
1 x PER: PEROXIDE ION(Non-covalent)
4 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
3 x TGL: TRISTEAROYLGLYCEROL(Non-covalent)
1 x CUA: DINUCLEAR COPPER ION(Non-covalent)
6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
4 x CHD: CHOLIC ACID(Non-covalent)
1 x PEK: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE(Non-covalent)
2 x CDL: CARDIOLIPIN(Non-covalent)
5 x UNL: UNKNOWN LIGAND
1 x PSC: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
1 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
1 x HEC: HEME C(Covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Shimada, S. et al., Complex structure of cytochrome c-cytochrome c oxidase reveals a novel protein-protein interaction mode. EMBO J. (2017)
Release Date
2017-01-11
Peptides
Cytochrome c oxidase subunit 1: A
Cytochrome c oxidase subunit 2: B
Cytochrome c oxidase subunit 3: C
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial: D
Cytochrome c oxidase subunit 5A, mitochondrial: E
Cytochrome c oxidase subunit 5B, mitochondrial: F
Cytochrome c oxidase subunit 6A2, mitochondrial: G
Cytochrome c oxidase subunit 6B1: H
Cytochrome c oxidase subunit 6C: I
Cytochrome c oxidase subunit 7A1, mitochondrial: J
Cytochrome c oxidase subunit 7B, mitochondrial: K
Cytochrome c oxidase subunit 7C, mitochondrial: L
Cytochrome c oxidase subunit 8B, mitochondrial: M
Cytochrome c: N
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
1
Membrane
We predict this structure to be a membrane protein.

Cytochrome c oxidase subunit 1

Cytochrome c oxidase subunit 2

Cytochrome c oxidase subunit 3

Cytochrome c oxidase subunit 4 isoform 1, mitochondrial

Cytochrome c oxidase subunit 5A, mitochondrial

Cytochrome c oxidase subunit 5B, mitochondrial

Cytochrome c oxidase subunit 6A2, mitochondrial

Cytochrome c oxidase subunit 6B1

Cytochrome c oxidase subunit 6C

Cytochrome c oxidase subunit 7A1, mitochondrial

Cytochrome c oxidase subunit 7B, mitochondrial

Cytochrome c oxidase subunit 7C, mitochondrial

Cytochrome c oxidase subunit 8B, mitochondrial

Cytochrome c

Related Entries With Identical Sequence

1crc.1 | 1crc.2 | 1hrc.1 | 1occ.1 | 1oco.1 | 1ocr.1 | 1ocz.1 | 1v54.1 | 1v55.1 | 1wej.1 | 1wej.2 | 2dyr.1 | 2dys.1 | 2eij.1 | 2eik.1 | 2eil.1 | 2eim.1 | 2ein.1 | 2occ.1 | 2occ.2 | 2occ.3 | 2y69.1 | 2y69.2 | 2ybb.1 | 2zxw.1 | 2zxw.2 | 3abk.1 | 3abk.2 | 3abl.1 | 3abl.2  more...