SMTL ID : 2hbh.1

Crystal structure of Vitamin D nuclear receptor ligand binding domain bound to a locked side-chain analog of calcitriol and SRC-1 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-2-2-mer

Ligands

2 x XE4: 1,3-CYCLOHEXANEDIOL, 4-METHYLENE-5-[(2E)-[(1S,3AS,7AS)-OCTAHYDRO-1-(5-HYDROXY-5-METHYL-1,3-HEXADIYNYL)-7A-METHYL-4H-INDEN-4-YLIDENE]ETHYLIDENE]-, (1R,3S,5Z)(Non-covalent)

XE4.1: 19 residues within 4Å: Chain A: Y.24, Y.28, L.104, L.107, L.110, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, H.272, Y.276, L.279 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.104, A:L.107, A:L.110, A:I.148, A:W.163, A:W.163, A:V.177, A:Y.276, A:L.279 Hydrogen bonds: A:R.151, A:R.151, A:S.155, A:H.182 XE4.2: 19 residues within 4Å: Chain C: Y.24, Y.28, L.104, L.107, L.110, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, H.272, Y.276, L.279 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:Y.24, C:L.104, C:L.107, C:L.110, C:I.148, C:W.163, C:W.163, C:V.177, C:Y.276, C:L.279 Hydrogen bonds: C:Y.24, C:R.151, C:R.151, C:S.155, C:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rochel, N. et al., Crystal structure of the vitamin D nuclear receptor ligand binding domain in complex with a locked side chain analog of calcitriol. Arch.Biochem.Biophys. (2007)

Release Date

2007-05-01

Peptides

Vitamin D receptor: AC
SRC-1 from Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D receptor

SRC-1 from Nuclear receptor coactivator 1

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