2nzd.1 | SWISS-MODEL Template Library

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SMTL ID : 2nzd.1

Nucleosome core particle containing 145 bp of DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

11 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)

MN.1:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MN.2:	2 residues within 4Å: Chain A: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.3:	2 residues within 4Å: Chain A: T.119, G.120 No protein-ligand interaction detected (PLIP)
MN.4:	1 residues within 4Å: Chain A: G.133 No protein-ligand interaction detected (PLIP)
MN.5:	2 residues within 4Å: Chain A: A.98, G.99 No protein-ligand interaction detected (PLIP)
MN.6:	2 residues within 4Å: Chain B: G.133, G.134 No protein-ligand interaction detected (PLIP)
MN.7:	1 residues within 4Å: Chain B: G.99 No protein-ligand interaction detected (PLIP)
MN.8:	1 residues within 4Å: Chain B: G.77 No protein-ligand interaction detected (PLIP)
MN.9:	1 residues within 4Å: Chain B: G.120 No protein-ligand interaction detected (PLIP)
MN.10:	2 residues within 4Å: Chain B: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.11:	1 residues within 4Å: Chain G: D.77 5 PLIP interactions: 1 interactions with chain G, 4 Ligand-Water interactions Metal complexes: G:D.77, H₂O.3, H₂O.4, H₂O.4, H₂O.4

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ong, M.S. et al., DNA stretching and extreme kinking in the nucleosome core. J.Mol.Biol. (2007)

Release Date

2007-04-10

Peptides

Histone H3: CG
Histone H4: DH
histone H2A: EI
Histone H2B: FJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

D
B

H
F

E
C

I
G

F
D

J
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3

Toggle Identical (CG)

Histone H4

histone H2A

Toggle Identical (EI)

Histone H2B

Toggle Identical (FJ)

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