SMTL ID : 3kuy.1

DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 1 residues within 4Å: Chain E: D.77 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:D.77

2 x ATV: 2-[(2R)-oxiran-2-ylmethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione(Non-functional Binders)

ATV.2: 4 residues within 4Å: Chain I: G.58, G.59 Chain J: C.87, C.88 No protein-ligand interaction detected (PLIP) ATV.3: 4 residues within 4Å: Chain I: C.87, C.88 Chain J: G.58, G.59 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davey, G.E. et al., DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent. Nucleic Acids Res. (2010)

Release Date

2010-01-05

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A: CG
Histone H2B: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Histone H3.2

Histone H4

Histone H2A

Histone H2B

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