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SMTL ID : 3lz0.1

Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1:	1 residues within 4Å: Chain A: D.77 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.77, A:D.77
MN.4:	1 residues within 4Å: Chain I: A.1 No protein-ligand interaction detected (PLIP)
MN.5:	2 residues within 4Å: Chain I: C.11, G.12 No protein-ligand interaction detected (PLIP)
MN.6:	1 residues within 4Å: Chain I: G.39 No protein-ligand interaction detected (PLIP)
MN.7:	2 residues within 4Å: Chain I: G.99, G.100 No protein-ligand interaction detected (PLIP)
MN.8:	2 residues within 4Å: Chain J: G.111, A.112 No protein-ligand interaction detected (PLIP)
MN.9:	2 residues within 4Å: Chain J: A.99, G.100 No protein-ligand interaction detected (PLIP)
MN.10:	1 residues within 4Å: Chain J: A.1 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:	7 residues within 4Å: Chain C: G.44, A.45, G.46, A.47 Chain D: T.90, S.91 Chain J: G.111 Ligand excluded by PLIP
CL.3:	6 residues within 4Å: Chain G: G.44, A.45, G.46, A.47 Chain H: T.90, S.91 Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Vasudevan, D. et al., Crystal structures of nucleosome core particles containing the '601' strong positioning sequence. J.Mol.Biol. (2010)

Release Date

2010-09-15

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.2

Histone H4

Histone H2A

Histone H2B 1.1

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