- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.44 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.1: 2 residues within 4Å:- Chain A: P.121, K.122
Ligand excluded by PLIPCL.5: 6 residues within 4Å:- Chain C: G.44, A.45, G.46, A.47
- Chain D: T.90, S.91
Ligand excluded by PLIPCL.7: 3 residues within 4Å:- Chain E: M.120, P.121, K.122
Ligand excluded by PLIPCL.8: 6 residues within 4Å:- Chain G: G.44, A.45, G.46, A.47
- Chain H: T.90, S.91
Ligand excluded by PLIP- 43 x CO: COBALT (II) ION(Non-covalent)(Non-functional Binders)
CO.2: 1 residues within 4Å:- Chain C: D.90
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:D.90
CO.3: 2 residues within 4Å:- Chain D: E.105, H.109
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:E.105, D:H.109
CO.4: 1 residues within 4Å:- Chain D: H.82
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:H.82
CO.6: 2 residues within 4Å:- Chain E: D.77
- Chain F: L.22
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:D.77
CO.9: 1 residues within 4Å:- Chain H: H.82
1 PLIP interactions:1 interactions with chain H- Metal complexes: H:H.82
CO.10: 3 residues within 4Å:- Chain H: E.105, K.108, H.109
1 PLIP interactions:1 interactions with chain H- Metal complexes: H:H.109
CO.11: 1 residues within 4Å:- Chain I: G.135
No protein-ligand interaction detected (PLIP)CO.12: 2 residues within 4Å:- Chain I: T.121, G.122
No protein-ligand interaction detected (PLIP)CO.13: 2 residues within 4Å:- Chain I: A.100, G.101
No protein-ligand interaction detected (PLIP)CO.14: 1 residues within 4Å:- Chain I: G.71
No protein-ligand interaction detected (PLIP)CO.15: 2 residues within 4Å:- Chain I: G.39, G.40
No protein-ligand interaction detected (PLIP)CO.16: 5 residues within 4Å:- Chain I: G.88, C.90
- Chain J: G.59, C.60, A.61
No protein-ligand interaction detected (PLIP)CO.17: 1 residues within 4Å:- Chain I: G.18
No protein-ligand interaction detected (PLIP)CO.18: 3 residues within 4Å:- Chain I: G.98, G.99
- Chain J: C.49
No protein-ligand interaction detected (PLIP)CO.19: 2 residues within 4Å:- Chain I: G.139
- Ligands: CO.23
No protein-ligand interaction detected (PLIP)CO.20: 1 residues within 4Å:- Chain I: C.10
No protein-ligand interaction detected (PLIP)CO.21: 5 residues within 4Å:- Chain I: C.133
- Chain J: T.14, G.15
- Ligands: CO.24, CO.41
No protein-ligand interaction detected (PLIP)CO.22: 1 residues within 4Å:- Chain I: A.103
No protein-ligand interaction detected (PLIP)CO.23: 3 residues within 4Å:- Chain I: G.138, G.139
- Ligands: CO.19
No protein-ligand interaction detected (PLIP)CO.24: 2 residues within 4Å:- Chain I: G.132
- Ligands: CO.21
No protein-ligand interaction detected (PLIP)CO.25: 1 residues within 4Å:- Chain I: T.141
No protein-ligand interaction detected (PLIP)CO.26: 1 residues within 4Å:- Chain I: G.145
No protein-ligand interaction detected (PLIP)CO.27: 1 residues within 4Å:- Chain I: G.68
No protein-ligand interaction detected (PLIP)CO.28: 2 residues within 4Å:- Chain I: G.46
- Chain J: G.101
No protein-ligand interaction detected (PLIP)CO.29: 3 residues within 4Å:- Chain J: A.134, G.135, G.136
No protein-ligand interaction detected (PLIP)CO.30: 1 residues within 4Å:- Chain J: G.122
No protein-ligand interaction detected (PLIP)CO.31: 1 residues within 4Å:- Chain J: G.71
No protein-ligand interaction detected (PLIP)CO.32: 1 residues within 4Å:- Chain J: G.68
No protein-ligand interaction detected (PLIP)CO.33: 2 residues within 4Å:- Chain J: G.39, G.40
No protein-ligand interaction detected (PLIP)CO.34: 1 residues within 4Å:- Chain J: A.103
No protein-ligand interaction detected (PLIP)CO.35: 1 residues within 4Å:- Chain J: G.18
No protein-ligand interaction detected (PLIP)CO.36: 1 residues within 4Å:- Chain J: G.82
No protein-ligand interaction detected (PLIP)CO.37: 1 residues within 4Å:- Chain J: G.79
No protein-ligand interaction detected (PLIP)CO.38: 2 residues within 4Å:- Chain J: T.144, G.145
No protein-ligand interaction detected (PLIP)CO.39: 2 residues within 4Å:- Chain J: G.126, T.127
No protein-ligand interaction detected (PLIP)CO.40: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CO.41: 3 residues within 4Å:- Chain J: G.15, C.16
- Ligands: CO.21
No protein-ligand interaction detected (PLIP)CO.42: 1 residues within 4Å:- Chain J: G.40
No protein-ligand interaction detected (PLIP)CO.43: 2 residues within 4Å:- Chain J: G.138, G.139
No protein-ligand interaction detected (PLIP)CO.44: 1 residues within 4Å:- Chain J: G.99
No protein-ligand interaction detected (PLIP)CO.45: 1 residues within 4Å:- Chain J: A.73
No protein-ligand interaction detected (PLIP)CO.46: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CO.47: 3 residues within 4Å:- Chain J: T.97, G.98, G.99
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mohideen, K. et al., Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res. (2010)
- Release Date
- 2010-06-16
- Peptides
- Histone H3.2: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EB
BF
FC
CG
GD
DH
H
SMTL ID : 3mgp.1
Binding of Cobalt ions to the Nucleosome Core Particle
Histone H3.2
Toggle Identical (AE)Histone H4
Histone H2A
Histone H2B 1.1
Related Entries With Identical Sequence
1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1s32.1 | 1zbb.1 | 1zla.1 | 2fj7.1 | 2io5.1 | 2nzd.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 | 3kxb.1 | 3lel.1 | 3lel.2 | 3lja.1 | 3lz0.1 | 3lz1.1 more...less...3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 3x1v.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4xuj.1 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5ja4.1 | 5kdm.1 | 5nl0.1 | 5nl0.2 | 5oxv.1 | 5oy7.1 | 5x0x.1 | 5x0y.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6fml.1 | 6iro.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6r1u.1 | 6r25.1 | 6s01.1 | 6t9l.1 | 6tda.1 | 6ugm.1 | 6uh5.1 | 6uxw.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 7a08.1 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7e8d.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jzv.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7ssa.1 | 7swy.1 | 7tn2.1 | 7u50.1 | 7u51.1 | 7u52.1 | 7u53.1 | 7uv9.1 | 7v1m.1 | 7v1m.2 | 7xpx.1 | 7y8r.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8atf.1 | 8av6.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8f86.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8hag.1 | 8hah.1 | 8hai.1 | 8haj.1 | 8hak.1 | 8hal.1 | 8ham.1 | 8han.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8jbx.1 | 8jcc.1 | 8jcd.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8oo7.1 | 8ooa.1 | 8oop.1 | 8oos.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8qzm.1 | 8siy.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8t9f.1 | 8t9h.1 | 8thu.1 | 8uxq.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vws.1 | 8vwt.1 | 8vwu.1 | 8vwv.1 | 8yv8.1 | 9ipu.1