SMTL ID : 8k6e.1

LnaB-Actin-PRUb ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 21 residues within 4Å: Chain A: D.11, G.13, S.14, G.15, M.16, K.18, Q.137, D.154, G.156, D.157, G.182, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336, V.339 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.14, A:G.15, A:M.16, A:K.18, A:D.154, A:D.157, A:D.157, A:K.213, A:E.214, A:E.214, A:G.302, A:T.303 Water bridges: A:T.186 Salt bridges: A:K.18

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Covalent)

AR6.2: 12 residues within 4Å: Chain B: N.164, D.165, Y.178, K.181, R.183, L.242, S.243, G.244, T.245, H.287 Chain C: R.42, R.72 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:N.164, B:Y.178, B:R.183, B:R.183, B:L.242, B:S.243, B:G.244, B:T.245 Water bridges: B:K.181, B:K.181 Salt bridges: B:K.181, B:H.287, C:R.42, C:R.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, T.T. et al., Complex structure of Legionella effector LnaB with host Actin and PR-Ub. To Be Published

Release Date

2025-02-05

Peptides

Actin gamma 1: A
Legionella effector LnaB: B
Polyubiquitin-B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Actin gamma 1

Legionella effector LnaB

Polyubiquitin-B

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