SMTL ID : 3rt4.1

Structural Basis of Recognition of Pathogen-associated Molecular Patterns and Inhibition of Proinflammatory Cytokines by Camel Peptidoglycan Recognition Protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

1 x LP5: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE(Non-covalent)

LP5.1: 32 residues within 4Å: Chain A: S.139, N.140, R.170 Chain C: N.63, L.64, W.66, K.90, A.92, H.93, A.94, G.95, P.96, N.99, P.100, H.146, Q.150, P.151 Chain D: W.66, A.92, H.93, A.94, G.95, P.96, T.97, W.98, N.99, K.144, D.148, V.149, Q.150, P.151, A.171 18 PLIP interactions: 7 interactions with chain C, 10 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: C:P.151, D:W.66, D:W.98, D:W.98, D:V.149, D:Q.150, D:P.151 Hydrogen bonds: C:W.66, C:N.99, D:A.94, D:T.97, D:Q.150, A:R.170 Water bridges: C:R.85, C:P.96, D:Q.150 Salt bridges: C:K.90, C:K.90

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 10 residues within 4Å: Chain C: H.37, A.39, T.152, L.153, S.154 Chain D: H.37, A.39, T.152, L.153, S.154 14 PLIP interactions: 5 interactions with chain C, 9 interactions with chain D Hydrogen bonds: C:L.153, C:S.154, D:T.152, D:L.153, D:S.154 Water bridges: C:H.37, C:T.152, D:P.151, D:P.151, D:T.152, D:T.152, D:T.152 Salt bridges: C:H.37, D:H.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, P. et al., Structural Basis of Recognition of Pathogen-associated Molecular Patterns and Inhibition of Proinflammatory Cytokines by Camel Peptidoglycan Recognition Protein. J.Biol.Chem. (2011)

Release Date

2011-06-15

Peptides

Peptidoglycan recognition protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptidoglycan recognition protein 1

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