SMTL ID : 3uml.1

Crystal structure of PGRP-S complexed with chorismate at 2.15 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

1 x ISJ: (3R,4R)-3-[(1-CARBOXYETHENYL)OXY]-4-HYDROXYCYCLOHEXA-1,5-DIENE-1-CARBOXYLIC ACID(Non-covalent)

ISJ.1: 9 residues within 4Å: Chain A: C.6, N.126, A.129 Chain B: A.5, C.6, A.133, L.134 Chain D: R.31, R.138 7 PLIP interactions: 3 interactions with chain D, 3 interactions with chain B, 1 interactions with chain A Water bridges: D:R.138 Salt bridges: D:R.31, D:R.138 Hydrophobic interactions: B:A.5, B:L.134 Hydrogen bonds: B:C.6, A:N.126

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain C: P.151 Chain D: H.37, Y.71, H.93, H.146, S.154 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Y.71, D:H.93 Water bridges: D:H.37, D:T.152, D:T.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of PGRP-S complexed with chorismate at 2.15 A resolution. To be Published

Release Date

2011-11-30

Peptides

Peptidoglycan recognition protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptidoglycan recognition protein 1

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