- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.92 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 19 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)
MN.1: 1 residues within 4Å:- Chain A: G.68
No protein-ligand interaction detected (PLIP)MN.2: 5 residues within 4Å:- Chain A: T.120, G.121, G.122
- Chain B: C.25
- Ligands: MN.7
No protein-ligand interaction detected (PLIP)MN.3: 1 residues within 4Å:- Chain A: G.134
No protein-ligand interaction detected (PLIP)MN.4: 1 residues within 4Å:- Chain A: G.78
No protein-ligand interaction detected (PLIP)MN.5: 1 residues within 4Å:- Chain A: G.87
No protein-ligand interaction detected (PLIP)MN.6: 1 residues within 4Å:- Chain A: G.134
No protein-ligand interaction detected (PLIP)MN.7: 2 residues within 4Å:- Chain A: G.121
- Ligands: MN.2
No protein-ligand interaction detected (PLIP)MN.8: 2 residues within 4Å:- Chain A: T.6, C.84
No protein-ligand interaction detected (PLIP)MN.9: 2 residues within 4Å:- Chain A: A.145, T.146
No protein-ligand interaction detected (PLIP)MN.10: 1 residues within 4Å:- Chain A: A.17
No protein-ligand interaction detected (PLIP)MN.11: 1 residues within 4Å:- Chain A: A.56
No protein-ligand interaction detected (PLIP)MN.14: 2 residues within 4Å:- Chain B: A.17, G.18
No protein-ligand interaction detected (PLIP)MN.15: 1 residues within 4Å:- Chain B: G.134
No protein-ligand interaction detected (PLIP)MN.16: 3 residues within 4Å:- Chain A: C.107
- Chain B: G.39, G.40
No protein-ligand interaction detected (PLIP)MN.17: 1 residues within 4Å:- Chain B: G.121
No protein-ligand interaction detected (PLIP)MN.18: 1 residues within 4Å:- Chain B: T.37
No protein-ligand interaction detected (PLIP)MN.19: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MN.23: 3 residues within 4Å:- Chain F: Q.48, V.49
- Ligands: CL.24
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:V.49
MN.25: 7 residues within 4Å:- Chain A: A.111
- Chain I: G.44, A.45, G.46, A.47
- Chain J: T.91, S.92
No protein-ligand interaction detected (PLIP)- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.12: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.13: 2 residues within 4Å:- Chain A: G.135, T.136
Ligand excluded by PLIPCL.20: 2 residues within 4Å:- Chain A: A.113
- Chain B: A.35
Ligand excluded by PLIPCL.21: 2 residues within 4Å:- Chain B: G.71, A.72
Ligand excluded by PLIPCL.22: 1 residues within 4Å:- Chain D: Q.93
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain E: E.64
- Chain F: V.49
- Ligands: MN.23
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Padavattan, S. et al., Structural and functional analyses of nucleosome complexes with mouse histone variants TH2a and TH2b, involved in reprogramming. Biochem.Biophys.Res.Commun. (2015)
- Release Date
- 2015-09-23
- Peptides
- Histone H3.1: CG
Histone H4: DH
Histone H2A type 1-B/E: EI
Histone H2B type 1-A: FJ - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AG
ED
BH
FE
CI
GF
DJ
H
SMTL ID : 3x1v.1
Crystal structure of nucleosome core particle in the presence of histone variant involved in reprogramming
Histone H3.1
Histone H4
Histone H2A type 1-B/E
Histone H2B type 1-A
Related Entries With Identical Sequence
1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1s32.1 | 1zbb.1 | 1zla.1 | 2fj7.1 | 2io5.1 | 2nzd.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 | 3kxb.1 | 3lel.1 | 3lel.2 | 3lja.1 | 3lz0.1 | 3lz1.1 more...less...3mgp.1 | 3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4xuj.1 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5ja4.1 | 5kdm.1 | 5nl0.1 | 5nl0.2 | 5oxv.1 | 5oy7.1 | 5x0y.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6fml.1 | 6iro.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6r1u.1 | 6r25.1 | 6s01.1 | 6t9l.1 | 6tda.1 | 6ugm.1 | 6uh5.1 | 6uxw.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 7a08.1 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7e8d.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jzv.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7swy.1 | 7tn2.1 | 7u50.1 | 7u51.1 | 7u52.1 | 7u53.1 | 7uv9.1 | 7v1m.1 | 7v1m.2 | 7v99.1 | 7w9v.1 | 7y8r.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8atf.1 | 8av6.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8f86.1 | 8g57.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8hag.1 | 8hah.1 | 8hai.1 | 8haj.1 | 8hak.1 | 8hal.1 | 8ham.1 | 8han.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8jbx.1 | 8jcc.1 | 8jcd.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8oo7.1 | 8ooa.1 | 8oop.1 | 8oos.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8qzm.1 | 8siy.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8uxq.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vws.1 | 8vwt.1 | 8vwu.1 | 8vwv.1 | 8yv8.1 | 9eoz.1 | 9ipu.1