SMTL ID : 3zfe.1 (3 other biounits)

Human enterovirus 71 in complex with capsid binding inhibitor WIN51711

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 11 residues within 4Å: Chain A: I.111, D.112, F.135, Y.153, F.155, V.179, V.192, Y.201, W.203, N.228, F.233 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.111, A:F.135, A:F.135, A:Y.153, A:F.155, A:V.179, A:V.192, A:V.192, A:W.203, A:F.233 Hydrogen bonds: A:I.111, A:D.112, A:Q.202

6 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: T.28, G.29, N.31, N.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.28, A:N.31, A:N.31 NA.3: 4 residues within 4Å: Chain A: S.56, T.58 Chain C: E.116, Q.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.58 NA.4: 7 residues within 4Å: Chain A: V.44, P.45, L.47, Q.48 Chain D: E.63, A.65, P.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.47, A:Q.48 NA.5: 3 residues within 4Å: Chain A: E.164, S.165, S.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.164, A:S.165 NA.6: 5 residues within 4Å: Chain A: S.15, S.17 Chain B: S.40, Y.41, R.103 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.43, B:R.103 NA.7: 3 residues within 4Å: Chain A: Q.189 Chain C: V.20, S.21 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.21, A:Q.189

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 6 residues within 4Å: Chain C: D.89, P.90, G.91, W.111, H.180, A.181 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plevka, P. et al., Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-03-27

Peptides

VP1: A
VP2: B
VP3: C
VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

VP1

VP2

VP3

VP4

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