SMTL ID : 8e39.3 (3 other biounits)

Purification of Enterovirus A71, strain 4643, WT capsid

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 18 residues within 4Å: Chain A: I.111, D.112, I.113, F.135, F.137, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, W.203, N.228, M.230, F.233, M.253 Chain C: I.24 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.111, A:I.111, A:F.135, A:F.135, A:F.137, A:F.155, A:V.179, A:V.192, A:V.192, A:Y.201, A:F.233, A:F.233, C:I.24 Hydrogen bonds: A:I.111, A:I.113, A:N.228 SPH.2: 18 residues within 4Å: Chain E: I.111, D.112, I.113, F.135, F.137, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, W.203, N.228, M.230, F.233, M.253 Chain G: I.24 16 PLIP interactions: 15 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.111, E:I.111, E:F.135, E:F.135, E:F.137, E:F.155, E:V.179, E:V.192, E:V.192, E:Y.201, E:F.233, E:F.233, G:I.24 Hydrogen bonds: E:I.111, E:I.113, E:N.228 SPH.3: 18 residues within 4Å: Chain I: I.111, D.112, I.113, F.135, F.137, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, W.203, N.228, M.230, F.233, M.253 Chain K: I.24 16 PLIP interactions: 15 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.111, I:I.111, I:F.135, I:F.135, I:F.137, I:F.155, I:V.179, I:V.192, I:V.192, I:Y.201, I:F.233, I:F.233, K:I.24 Hydrogen bonds: I:I.111, I:I.113, I:N.228 SPH.4: 18 residues within 4Å: Chain M: I.111, D.112, I.113, F.135, F.137, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, W.203, N.228, M.230, F.233, M.253 Chain O: I.24 16 PLIP interactions: 15 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.111, M:I.111, M:F.135, M:F.135, M:F.137, M:F.155, M:V.179, M:V.192, M:V.192, M:Y.201, M:F.233, M:F.233, O:I.24 Hydrogen bonds: M:I.111, M:I.113, M:N.228 SPH.5: 18 residues within 4Å: Chain Q: I.111, D.112, I.113, F.135, F.137, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, W.203, N.228, M.230, F.233, M.253 Chain S: I.24 16 PLIP interactions: 15 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:I.111, Q:I.111, Q:F.135, Q:F.135, Q:F.137, Q:F.155, Q:V.179, Q:V.192, Q:V.192, Q:Y.201, Q:F.233, Q:F.233, S:I.24 Hydrogen bonds: Q:I.111, Q:I.113, Q:N.228 SPH.6: 18 residues within 4Å: Chain U: I.111, D.112, I.113, F.135, F.137, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, W.203, N.228, M.230, F.233, M.253 Chain W: I.24 16 PLIP interactions: 15 interactions with chain U, 1 interactions with chain W Hydrophobic interactions: U:I.111, U:I.111, U:F.135, U:F.135, U:F.137, U:F.155, U:V.179, U:V.192, U:V.192, U:Y.201, U:F.233, U:F.233, W:I.24 Hydrogen bonds: U:I.111, U:I.113, U:N.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Catching, A. et al., A tradeoff between enterovirus A71 particle stability and cell entry. Nat Commun (2023)

Release Date

2023-08-30

Peptides

VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

VP1

VP2

VP3

VP4

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