SMTL ID : 8e38.3 (3 other biounits)

Purification of Enterovirus A71, strain 4643, WT capsid

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 10 residues within 4Å: Chain A: V.123, E.124, T.127, M.129, Y.201, Q.202, W.203, F.204, A.275 Chain B: V.131 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Q.202, A:W.203, A:F.204, A:A.275, B:V.131 Hydrogen bonds: A:V.123, A:W.203 SPH.2: 10 residues within 4Å: Chain E: V.123, E.124, T.127, M.129, Y.201, Q.202, W.203, F.204, A.275 Chain F: V.131 7 PLIP interactions: 6 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:Q.202, E:W.203, E:F.204, E:A.275, F:V.131 Hydrogen bonds: E:V.123, E:W.203 SPH.3: 10 residues within 4Å: Chain I: V.123, E.124, T.127, M.129, Y.201, Q.202, W.203, F.204, A.275 Chain J: V.131 7 PLIP interactions: 6 interactions with chain I, 1 interactions with chain J Hydrophobic interactions: I:Q.202, I:W.203, I:F.204, I:A.275, J:V.131 Hydrogen bonds: I:V.123, I:W.203 SPH.4: 10 residues within 4Å: Chain M: V.123, E.124, T.127, M.129, Y.201, Q.202, W.203, F.204, A.275 Chain N: V.131 7 PLIP interactions: 1 interactions with chain N, 6 interactions with chain M Hydrophobic interactions: N:V.131, M:Q.202, M:W.203, M:F.204, M:A.275 Hydrogen bonds: M:V.123, M:W.203 SPH.5: 10 residues within 4Å: Chain Q: V.123, E.124, T.127, M.129, Y.201, Q.202, W.203, F.204, A.275 Chain R: V.131 7 PLIP interactions: 6 interactions with chain Q, 1 interactions with chain R Hydrophobic interactions: Q:Q.202, Q:W.203, Q:F.204, Q:A.275, R:V.131 Hydrogen bonds: Q:V.123, Q:W.203 SPH.6: 10 residues within 4Å: Chain U: V.123, E.124, T.127, M.129, Y.201, Q.202, W.203, F.204, A.275 Chain V: V.131 7 PLIP interactions: 6 interactions with chain U, 1 interactions with chain V Hydrophobic interactions: U:Q.202, U:W.203, U:F.204, U:A.275, V:V.131 Hydrogen bonds: U:V.123, U:W.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Catching, A. et al., A tradeoff between enterovirus A71 particle stability and cell entry. Nat Commun (2023)

Release Date

2023-08-30

Peptides

VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

VP1

VP2

VP3

VP4

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