SMTL ID : 4aed.3 (3 other biounits)

Crystal structure of Human enterovirus 71

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x DAO: LAURIC ACID(Non-covalent)

DAO.1: 7 residues within 4Å: Chain A: D.112, F.135, V.192, G.223, N.228, M.230, A.275 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.135, A:V.192, A:N.228 Hydrogen bonds: A:G.223, A:N.228 DAO.7: 7 residues within 4Å: Chain E: D.112, F.135, V.192, G.223, N.228, M.230, A.275 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:F.135, E:V.192, E:N.228 Hydrogen bonds: E:G.223, E:N.228 DAO.13: 7 residues within 4Å: Chain I: D.112, F.135, V.192, G.223, N.228, M.230, A.275 5 PLIP interactions: 5 interactions with chain I Hydrophobic interactions: I:F.135, I:V.192, I:N.228 Hydrogen bonds: I:G.223, I:N.228 DAO.19: 7 residues within 4Å: Chain M: D.112, F.135, V.192, G.223, N.228, M.230, A.275 5 PLIP interactions: 5 interactions with chain M Hydrophobic interactions: M:F.135, M:V.192, M:N.228 Hydrogen bonds: M:G.223, M:N.228 DAO.25: 7 residues within 4Å: Chain Q: D.112, F.135, V.192, G.223, N.228, M.230, A.275 5 PLIP interactions: 5 interactions with chain Q Hydrophobic interactions: Q:F.135, Q:V.192, Q:N.228 Hydrogen bonds: Q:G.223, Q:N.228 DAO.31: 7 residues within 4Å: Chain U: D.112, F.135, V.192, G.223, N.228, M.230, A.275 5 PLIP interactions: 5 interactions with chain U Hydrophobic interactions: U:F.135, U:V.192, U:N.228 Hydrogen bonds: U:G.223, U:N.228

30 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.2: 3 residues within 4Å: Chain B: D.67, D.156 Chain S: K.79 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.67, B:D.156 CA.3: 3 residues within 4Å: Chain B: D.84, Y.148, Q.152 No protein-ligand interaction detected (PLIP) CA.4: 4 residues within 4Å: Chain B: D.225 Chain C: G.207, A.208, N.210 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.225 CA.5: 5 residues within 4Å: Chain C: I.206 Chain O: I.206 Chain S: I.206 Ligands: CA.23, CA.29 No protein-ligand interaction detected (PLIP) CA.6: 1 residues within 4Å: Ligands: CA.12 No protein-ligand interaction detected (PLIP) CA.8: 2 residues within 4Å: Chain F: D.67, D.156 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.67, F:D.156 CA.9: 3 residues within 4Å: Chain F: D.84, Y.148, Q.152 No protein-ligand interaction detected (PLIP) CA.10: 4 residues within 4Å: Chain F: D.225 Chain G: G.207, A.208, N.210 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:D.225 CA.11: 1 residues within 4Å: Chain G: I.206 No protein-ligand interaction detected (PLIP) CA.12: 1 residues within 4Å: Ligands: CA.6 No protein-ligand interaction detected (PLIP) CA.14: 2 residues within 4Å: Chain J: D.67, D.156 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:D.67, J:D.156 CA.15: 3 residues within 4Å: Chain J: D.84, Y.148, Q.152 No protein-ligand interaction detected (PLIP) CA.16: 4 residues within 4Å: Chain J: D.225 Chain K: G.207, A.208, N.210 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:D.225 CA.17: 1 residues within 4Å: Chain K: I.206 No protein-ligand interaction detected (PLIP) CA.18: 1 residues within 4Å: Ligands: CA.24 No protein-ligand interaction detected (PLIP) CA.20: 3 residues within 4Å: Chain C: K.79 Chain N: D.67, D.156 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:D.67, N:D.156 CA.21: 3 residues within 4Å: Chain N: D.84, Y.148, Q.152 No protein-ligand interaction detected (PLIP) CA.22: 4 residues within 4Å: Chain N: D.225 Chain O: G.207, A.208, N.210 1 PLIP interactions: 1 interactions with chain N Metal complexes: N:D.225 CA.23: 5 residues within 4Å: Chain C: I.206 Chain O: I.206 Chain S: I.206 Ligands: CA.5, CA.29 No protein-ligand interaction detected (PLIP) CA.24: 1 residues within 4Å: Ligands: CA.18 No protein-ligand interaction detected (PLIP) CA.26: 3 residues within 4Å: Chain O: K.79 Chain R: D.67, D.156 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:D.67, R:D.156 CA.27: 3 residues within 4Å: Chain R: D.84, Y.148, Q.152 No protein-ligand interaction detected (PLIP) CA.28: 4 residues within 4Å: Chain R: D.225 Chain S: G.207, A.208, N.210 1 PLIP interactions: 1 interactions with chain R Metal complexes: R:D.225 CA.29: 5 residues within 4Å: Chain C: I.206 Chain O: I.206 Chain S: I.206 Ligands: CA.5, CA.23 No protein-ligand interaction detected (PLIP) CA.30: 1 residues within 4Å: Ligands: CA.36 No protein-ligand interaction detected (PLIP) CA.32: 2 residues within 4Å: Chain V: D.67, D.156 2 PLIP interactions: 2 interactions with chain V Metal complexes: V:D.67, V:D.156 CA.33: 3 residues within 4Å: Chain V: D.84, Y.148, Q.152 No protein-ligand interaction detected (PLIP) CA.34: 4 residues within 4Å: Chain V: D.225 Chain W: G.207, A.208, N.210 1 PLIP interactions: 1 interactions with chain V Metal complexes: V:D.225 CA.35: 1 residues within 4Å: Chain W: I.206 No protein-ligand interaction detected (PLIP) CA.36: 1 residues within 4Å: Ligands: CA.30 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plevka, P. et al., Crystal Structure of Human Enterovirus 71. Science (2012)

Release Date

2012-04-25

Peptides

VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

VP1

VP2

VP3

VP4

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