SMTL ID : 3zfg.3 (3 other biounits)

Human enterovirus 71 in complex with capsid binding inhibitor WIN51711

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x W71: 5-(7-(4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE(Non-covalent)

W71.1: 16 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 Chain C: I.24 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.111, A:I.113, A:F.135, A:F.135, A:V.179, A:V.190, A:V.192, A:V.192, A:Y.201, A:W.203 Hydrogen bonds: A:I.113 pi-Stacking: A:F.137, A:Y.201 W71.2: 16 residues within 4Å: Chain E: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 Chain G: I.24 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:I.111, E:I.113, E:F.135, E:F.135, E:V.179, E:V.190, E:V.192, E:V.192, E:Y.201, E:W.203 Hydrogen bonds: E:I.113 pi-Stacking: E:F.137, E:Y.201 W71.3: 16 residues within 4Å: Chain I: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 Chain K: I.24 13 PLIP interactions: 13 interactions with chain I Hydrophobic interactions: I:I.111, I:I.113, I:F.135, I:F.135, I:V.179, I:V.190, I:V.192, I:V.192, I:Y.201, I:W.203 Hydrogen bonds: I:I.113 pi-Stacking: I:F.137, I:Y.201 W71.4: 16 residues within 4Å: Chain M: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 Chain O: I.24 13 PLIP interactions: 13 interactions with chain M Hydrophobic interactions: M:I.111, M:I.113, M:F.135, M:F.135, M:V.179, M:V.190, M:V.192, M:V.192, M:Y.201, M:W.203 Hydrogen bonds: M:I.113 pi-Stacking: M:F.137, M:Y.201 W71.5: 16 residues within 4Å: Chain Q: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 Chain S: I.24 13 PLIP interactions: 13 interactions with chain Q Hydrophobic interactions: Q:I.111, Q:I.113, Q:F.135, Q:F.135, Q:V.179, Q:V.190, Q:V.192, Q:V.192, Q:Y.201, Q:W.203 Hydrogen bonds: Q:I.113 pi-Stacking: Q:F.137, Q:Y.201 W71.6: 16 residues within 4Å: Chain U: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.190, V.192, Y.201, W.203, N.228, M.230, F.233 Chain W: I.24 13 PLIP interactions: 13 interactions with chain U Hydrophobic interactions: U:I.111, U:I.113, U:F.135, U:F.135, U:V.179, U:V.190, U:V.192, U:V.192, U:Y.201, U:W.203 Hydrogen bonds: U:I.113 pi-Stacking: U:F.137, U:Y.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plevka, P. et al., Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-03-27

Peptides

VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

VP1

VP2

VP3

VP4

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