SMTL ID : 4n53.2 (3 other biounits)

Human enterovirus 71 uncoating intermediate captured at atomic resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.31 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 12 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.135, F.155, M.195, Y.201, W.203, N.228, M.230, A.275 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.113, A:F.135, A:F.135, A:F.155, A:F.155, A:F.155, A:W.203, A:N.228, A:M.230 Hydrogen bonds: A:D.112, A:D.112, A:I.113, A:T.114, A:N.228 SPH.2: 12 residues within 4Å: Chain E: I.111, D.112, I.113, T.114, F.135, F.155, M.195, Y.201, W.203, N.228, M.230, A.275 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:I.113, E:F.135, E:F.135, E:F.155, E:F.155, E:F.155, E:W.203, E:N.228, E:M.230 Hydrogen bonds: E:D.112, E:D.112, E:I.113, E:T.114, E:N.228 SPH.3: 12 residues within 4Å: Chain I: I.111, D.112, I.113, T.114, F.135, F.155, M.195, Y.201, W.203, N.228, M.230, A.275 14 PLIP interactions: 14 interactions with chain I Hydrophobic interactions: I:I.113, I:F.135, I:F.135, I:F.155, I:F.155, I:F.155, I:W.203, I:N.228, I:M.230 Hydrogen bonds: I:D.112, I:D.112, I:I.113, I:T.114, I:N.228 SPH.4: 12 residues within 4Å: Chain M: I.111, D.112, I.113, T.114, F.135, F.155, M.195, Y.201, W.203, N.228, M.230, A.275 14 PLIP interactions: 14 interactions with chain M Hydrophobic interactions: M:I.113, M:F.135, M:F.135, M:F.155, M:F.155, M:F.155, M:W.203, M:N.228, M:M.230 Hydrogen bonds: M:D.112, M:D.112, M:I.113, M:T.114, M:N.228 SPH.5: 12 residues within 4Å: Chain Q: I.111, D.112, I.113, T.114, F.135, F.155, M.195, Y.201, W.203, N.228, M.230, A.275 14 PLIP interactions: 14 interactions with chain Q Hydrophobic interactions: Q:I.113, Q:F.135, Q:F.135, Q:F.155, Q:F.155, Q:F.155, Q:W.203, Q:N.228, Q:M.230 Hydrogen bonds: Q:D.112, Q:D.112, Q:I.113, Q:T.114, Q:N.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, K. et al., Human enterovirus 71 uncoating captured at atomic resolution. J.Virol. (2014)

Release Date

2014-02-05

Peptides

Capsid protein VP1: AEIMQ
Capsid protein VP2: BFJNR
Capsid protein VP3: CGKOS
Capsid protein VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

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