SMTL ID : 3zff.2 (3 other biounits)

Human enterovirus 71 in complex with capsid binding inhibitor WIN51711

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x W71: 5-(7-(4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE(Non-covalent)

W71.1: 14 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.192, Y.201, W.203, N.228, F.233 Chain C: I.24 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.111, A:I.113, A:I.113, A:F.135, A:F.135, A:F.155, A:V.179, A:V.192, A:V.192, A:Y.201, A:W.203, A:N.228, C:I.24 Hydrogen bonds: A:I.113 pi-Stacking: A:F.137, A:Y.201 W71.2: 14 residues within 4Å: Chain E: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.192, Y.201, W.203, N.228, F.233 Chain G: I.24 16 PLIP interactions: 15 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.111, E:I.113, E:I.113, E:F.135, E:F.135, E:F.155, E:V.179, E:V.192, E:V.192, E:Y.201, E:W.203, E:N.228, G:I.24 Hydrogen bonds: E:I.113 pi-Stacking: E:F.137, E:Y.201 W71.3: 14 residues within 4Å: Chain I: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.192, Y.201, W.203, N.228, F.233 Chain K: I.24 16 PLIP interactions: 15 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.111, I:I.113, I:I.113, I:F.135, I:F.135, I:F.155, I:V.179, I:V.192, I:V.192, I:Y.201, I:W.203, I:N.228, K:I.24 Hydrogen bonds: I:I.113 pi-Stacking: I:F.137, I:Y.201 W71.4: 14 residues within 4Å: Chain M: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.192, Y.201, W.203, N.228, F.233 Chain O: I.24 16 PLIP interactions: 15 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.111, M:I.113, M:I.113, M:F.135, M:F.135, M:F.155, M:V.179, M:V.192, M:V.192, M:Y.201, M:W.203, M:N.228, O:I.24 Hydrogen bonds: M:I.113 pi-Stacking: M:F.137, M:Y.201 W71.5: 14 residues within 4Å: Chain Q: I.111, D.112, I.113, T.114, F.135, F.155, P.177, V.179, V.192, Y.201, W.203, N.228, F.233 Chain S: I.24 16 PLIP interactions: 15 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:I.111, Q:I.113, Q:I.113, Q:F.135, Q:F.135, Q:F.155, Q:V.179, Q:V.192, Q:V.192, Q:Y.201, Q:W.203, Q:N.228, S:I.24 Hydrogen bonds: Q:I.113 pi-Stacking: Q:F.137, Q:Y.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plevka, P. et al., Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-03-27

Peptides

VP1: AEIMQ
VP2: BFJNR
VP3: CGKOS
VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

VP1

VP2

VP3

VP4

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