SMTL ID : 4dos.3 (2 other biounits)

Human Nuclear Receptor Liver Receptor Homologue-1, LRH-1, Bound to DLPC and a Fragment of TIF-2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-4-2-mer

Ligands

6 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 9 residues within 4Å: Chain C: M.27, L.30, Q.31, L.48, M.49, M.52, Q.113, Q.114, V.115 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.113 Water bridges: C:Q.114 1PE.2: 5 residues within 4Å: Chain C: M.215, E.218, E.219, Y.222, L.240 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.219 1PE.4: 14 residues within 4Å: Chain C: A.3, I.5, L.10, R.150, Y.188, N.192 Chain E: A.3, I.5, L.10, R.150, Y.188, N.192, Y.193 Ligands: 1PE.8 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain C Hydrogen bonds: E:Y.188, C:R.150, C:Y.193 Water bridges: E:R.150 1PE.5: 9 residues within 4Å: Chain E: M.27, L.30, Q.31, L.48, M.49, M.52, Q.113, Q.114, V.115 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:Q.113 Water bridges: E:Q.114 1PE.6: 5 residues within 4Å: Chain E: M.215, E.218, E.219, Y.222, L.240 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.218 1PE.8: 14 residues within 4Å: Chain C: A.3, I.5, L.10, R.150, Y.188, N.192, Y.193 Chain E: A.3, I.5, L.10, R.150, Y.188, N.192 Ligands: 1PE.4 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:R.150, E:Y.188, E:Y.193, E:Y.193 Water bridges: C:R.150

2 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)

PLC.3: 19 residues within 4Å: Chain C: T.45, F.46, M.49, W.86, S.87, H.94, V.115, I.120, Q.123, A.124, G.125, L.128, L.131, A.217, E.218, Y.220, L.221, K.224, L.236 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:M.49, C:W.86, C:V.115, C:L.128, C:L.131, C:A.217, C:Y.220, C:L.221, C:L.236 Hydrogen bonds: C:G.125, C:Y.220, C:Y.220 Salt bridges: C:K.224 PLC.7: 19 residues within 4Å: Chain E: T.45, F.46, M.49, W.86, S.87, H.94, V.115, I.120, Q.123, A.124, G.125, L.128, L.131, A.217, E.218, Y.220, L.221, K.224, L.236 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:M.49, E:W.86, E:V.115, E:L.128, E:L.131, E:A.217, E:Y.220, E:L.221, E:L.236 Hydrogen bonds: E:G.125, E:Y.220 Salt bridges: E:K.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Musille, P.M. et al., Antidiabetic phospholipid-nuclear receptor complex reveals the mechanism for phospholipid-driven gene regulation. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-04-18

Peptides

Nuclear receptor coactivator 2: ABDF
Nuclear receptor subfamily 5 group A member 2: CE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

D
B

F
B

C
A

E
A

Nuclear receptor coactivator 2

Nuclear receptor subfamily 5 group A member 2

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