SMTL ID : 4udd.1

GR in complex with desisobutyrylciclesonide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.1: 10 residues within 4Å: Chain A: T.59, W.60, D.144, Q.145, N.234, Y.238, Q.241, T.242, M.248, I.250 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.59, A:W.60, A:Y.238, A:T.242, A:M.248, A:I.250 Hydrogen bonds: A:D.144 CPS.2: 6 residues within 4Å: Chain A: Y.143, K.147, H.148, Y.151, E.230, V.231 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.147, A:Y.151, A:Y.151, A:V.231 Hydrogen bonds: A:Y.143 Water bridges: A:E.230 CPS.3: 8 residues within 4Å: Chain A: M.194, K.198, G.201, V.205, S.211, N.214, W.215, F.218 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.198, A:V.205, A:N.214, A:W.215, A:W.215, A:F.218, A:F.218 Hydrogen bonds: A:S.211

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: E.43, P.44, W.80, L.106, M.107, K.170 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.170

1 x CV7: DESISOBUYTYRYL CICLESONIDE(Non-covalent)

CV7.5: 17 residues within 4Å: Chain A: M.63, L.66, N.67, G.70, Q.73, M.104, M.107, R.114, F.126, Q.145, C.146, M.149, Y.238, C.239, T.242, I.250, F.252 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.66, A:L.66, A:M.107, A:F.126 Hydrogen bonds: A:N.67, A:N.67, A:Q.73, A:R.114, A:T.242 Water bridges: A:L.111 pi-Stacking: A:F.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edman, K. et al., Ligand Binding Mechanism in Steroid Receptors: From Conserved Plasticity to Differential Evolutionary Constraints. Structure (2015)

Release Date

2015-11-25

Peptides

GLUCOCORTICOID RECEPTOR: A
NUCLEAR RECEPTOR COACTIVATOR 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLUCOCORTICOID RECEPTOR

NUCLEAR RECEPTOR COACTIVATOR 2

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