SMTL ID : 8vkz.1

Crystal structure of Glucocorticoid Receptor in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 01: (4aR,4bS,5R,6aS,6bS,8R,9aR,10aR,10bR)-8-{4-[(3-aminophenyl)methyl]phenyl}-5-hydroxy-6b-(hydroxyacetyl)-4a,6a-dimethyl-4a,4b,5,6,6a,6b,9a,10,10a,10b,11,12-dodecahydro-2H,8H-naphtho[2',1':4,5]indeno[1,2-d][1,3]dioxol-2-one

01.1: 20 residues within 4Å: Chain A: M.35, L.38, N.39, G.42, Q.45, W.75, M.76, M.79, R.86, F.98, I.104, E.106, M.114, C.118, M.121, Y.210, C.211, T.214, I.222, F.224 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.38, A:W.75, A:M.79, A:F.98, A:F.98, A:I.104, A:M.114 Hydrogen bonds: A:N.39, A:Q.45, A:R.86, A:E.106, A:T.214 Water bridges: A:R.86 01.2: 21 residues within 4Å: Chain B: I.34, M.35, L.38, N.39, G.42, Q.45, W.75, M.76, M.79, R.86, F.98, I.104, E.106, M.114, C.118, M.121, Y.210, C.211, T.214, I.222, F.224 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:I.34, B:L.38, B:L.38, B:W.75, B:M.79, B:F.98, B:F.98, B:I.104 Hydrogen bonds: B:N.39, B:Q.45, B:R.86, B:E.106, B:T.214 Water bridges: B:R.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hobson, A.D. et al., Minimising the payload solvent exposed hydrophobic surface area optimises the antibody-drug conjugate properties. Rsc Med Chem (2024)

Release Date

2024-01-24

Peptides

Glucocorticoid receptor: AB
Nuclear receptor coactivator 2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

Glucocorticoid receptor

Nuclear receptor coactivator 2

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