SMTL ID : 5nfp.1

Glucocorticoid Receptor in complex with budesonide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.1: 10 residues within 4Å: Chain A: T.59, W.60, M.63, D.141, Q.145, Y.238, Q.241, T.242, M.248, I.250 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.59, A:W.60, A:D.141, A:Y.238, A:T.242, A:M.248, A:I.250 Hydrogen bonds: A:Y.238, A:Q.241 Water bridges: A:D.144

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: P.44, A.77, W.80, M.107, A.110, K.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.170, A:K.170 Water bridges: A:Q.73

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: R.158, L.159, Q.160, R.217 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.217

1 x 8W5: (1~{S},2~{S},4~{R},6~{R},8~{S},9~{S},11~{S},12~{S},13~{R})-9,13-dimethyl-11-oxidanyl-8-(2-oxidanylethanoyl)-6-propyl-5,7-dioxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosa-14,17-dien-16-one(Non-covalent)

8W5.4: 19 residues within 4Å: Chain A: M.63, L.66, N.67, G.70, Q.73, M.104, M.107, R.114, F.126, M.142, Q.145, C.146, M.149, Y.238, C.239, T.242, I.250, F.252, L.256 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.66, A:L.66, A:M.107, A:Q.145 Hydrogen bonds: A:N.67, A:N.67, A:Q.73, A:R.114, A:T.242 Water bridges: A:R.114 pi-Stacking: A:F.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hemmerling, M. et al., Selective Nonsteroidal Glucocorticoid Receptor Modulators for the Inhaled Treatment of Pulmonary Diseases. J. Med. Chem. (2017)

Release Date

2017-10-04

Peptides

Glucocorticoid receptor: A
Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucocorticoid receptor

Nuclear receptor coactivator 2

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