SMTL ID : 8daf.2 (1 other biounit)

Human SF-1 LBD bound to synthetic agonist 6N-10CA and bacterial phospholipid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-1-1-mer

Ligands

1 x IUW: 10-[(3aR,6S,6aR)-3-phenyl-3a-(1-phenylethenyl)-6-(sulfamoylamino)-1,3a,4,5,6,6a-hexahydropentalen-2-yl]decanoic acid (non-preferred name)(Non-covalent)

IUW.1: 30 residues within 4Å: Chain A: F.48, L.51, C.52, M.54, A.55, T.58, L.92, V.93, H.96, R.99, I.109, L.111, V.112, V.117, T.121, V.122, Q.125, A.126, G.127, L.130, L.133, V.134, A.137, L.215, A.219, Y.222, L.223, M.232, L.238 Ligands: PEF.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.55, A:H.96, A:I.109, A:A.126, A:L.133, A:A.137 Hydrogen bonds: A:V.112, A:G.127 Water bridges: A:R.99, A:R.99 pi-Stacking: A:H.96

1 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.2: 26 residues within 4Å: Chain A: F.48, L.51, C.52, A.55, L.92, V.93, H.96, I.109, L.111, V.117, T.121, V.122, Q.125, A.126, G.127, L.130, L.133, V.134, A.137, L.215, A.219, Y.222, L.223, K.226, L.238 Ligands: IUW.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.48, A:F.48, A:L.51, A:L.92, A:H.96, A:I.109, A:V.117, A:L.130, A:L.130, A:L.133, A:A.137 Hydrogen bonds: A:G.127, A:Y.222, A:Y.222 Salt bridges: A:K.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cato, M.L. et al., Comparison of activity, structure, and dynamics of SF-1 and LRH-1 complexed with small molecule modulators. J.Biol.Chem. (2023)

Release Date

2023-06-28

Peptides

Steroidogenic factor 1: A
Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Steroidogenic factor 1

Nuclear receptor coactivator 2

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