SMTL ID : 4h4m.1

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with (E)-3-(3-chloro-5-(4-chloro-2-(2-(2,4-dioxo-3,4- dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile (JLJ494), a Non-nucleoside Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 494: (2E)-3-(3-chloro-5-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile(Non-covalent)

494.1: 16 residues within 4Å: Chain A: P.97, L.102, K.103, K.104, K.105, V.108, V.110, V.181, Y.183, Y.190, K.225, F.229, W.231, L.236, P.238, Y.320 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.102, A:V.108, A:V.110, A:Y.183, A:Y.183, A:Y.190, A:Y.190, A:Y.190, A:Y.190, A:F.229, A:W.231, A:L.236 Hydrogen bonds: A:K.104, A:K.105, A:K.105, A:K.225 pi-Stacking: A:W.231

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frey, K.M. et al., Crystal Structures of HIV-1 Reverse Transcriptase with Picomolar Inhibitors Reveal Key Interactions for Drug Design. J.Am.Chem.Soc. (2012)

Release Date

2012-12-05

Peptides

Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT: A
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT

Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT

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