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SMTL ID : 4j8u.1

X-ray structure of NCP145 with chlorido(eta-6-p-cymene)(N-phenyl-2-pyridinecarbothioamide)osmium(II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	7 residues within 4Å: Chain C: G.44, A.45, G.46, A.47 Chain D: T.90, S.91, R.92 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:G.46, C:A.47, D:T.90, D:S.91, D:R.92
SO4.4:	7 residues within 4Å: Chain G: G.44, A.45, G.46, A.47 Chain H: T.90, S.91 Chain I: A.110 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain G Hydrogen bonds: H:S.91, G:G.46, G:A.47
SO4.5:	4 residues within 4Å: Chain H: H.49, P.50, D.51, T.52 7 PLIP interactions: 7 interactions with chain H Hydrogen bonds: H:D.51, H:D.51, H:D.51, H:T.52, H:T.52, H:T.52 Salt bridges: H:H.49

3 x ELJ: chlorido(eta-6-p-cymene)(N-phenyl-2-pyridinecarbothioamide)osmium(II)(Non-covalent)

ELJ.2:	8 residues within 4Å: Chain B: M.84, G.102 Chain D: H.82 Chain G: G.37, Y.39 Chain H: K.34, N.67, E.71 1 PLIP interactions: 1 interactions with chain H pi-Cation interactions: H:K.34
ELJ.6:	6 residues within 4Å: Chain G: Y.57, E.61, E.92 Chain H: E.105, L.106, H.109 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:E.105, H:L.106
ELJ.7:	9 residues within 4Å: Chain C: L.33, K.36, G.37, Y.39 Chain D: E.71 Chain F: M.84, Y.88, G.101 Chain H: H.82 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain F Hydrophobic interactions: D:E.71 Hydrogen bonds: F:Y.88

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3:

1 residues within 4Å:

Chain E: D.77

1 PLIP interactions:

1 interactions with chain E

Metal complexes: E:D.77

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Meier, S.M. et al., Novel metal(II) arene 2-pyridinecarbothioamides: a rationale to orally active organometallic anticancer agents. CHEM SCI (2013)

Release Date

2013-04-17

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B 1.1: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.2

Toggle Identical (AE)

Histone H4

Histone H2A type 1

Toggle Identical (CG)

Histone H2B 1.1

Toggle Identical (DH)

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