SMTL ID : 4ko0.1

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH an anilinylpyrimidine derivative (JLJ-135)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x JLJ: 4-[(4-methoxypyrimidin-2-yl)amino]-2-[(3-methylbut-2-en-1-yl)oxy]benzonitrile(Non-covalent)

JLJ.1: 14 residues within 4Å: Chain A: L.102, K.103, K.105, V.108, V.181, Y.183, Y.190, F.229, W.231, L.236, H.237, P.238, Y.320 Chain B: E.138 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.105, A:V.108, A:V.181, A:Y.183, A:Y.183, A:Y.190, A:W.231, A:W.231, A:L.236, A:Y.320 Hydrogen bonds: A:K.103, A:K.103

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.333, G.335, Q.336, K.514 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.336 Water bridges: A:G.337 Salt bridges: A:K.333, A:K.514 SO4.3: 4 residues within 4Å: Chain A: K.478, S.517, E.518, L.519 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.518, A:L.519 Salt bridges: A:K.478

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: N.365, L.427, W.428, Y.429, Q.511, D.513 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.426, A:W.428, A:Y.429, A:Y.429 EDO.5: 4 residues within 4Å: Chain B: W.24, E.399, W.402, T.403 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.399

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bollini, M. et al., Extension into the entrance channel of HIV-1 reverse transcriptase-Crystallography and enhanced solubility. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-08-14

Peptides

HIV-1 reverse transcriptase, p66 subunit: A
HIV-1 reverse transcriptase, p51 subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 reverse transcriptase, p66 subunit

HIV-1 reverse transcriptase, p51 subunit

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