SMTL ID : 4lsn.1

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with (E)-3-(3-bromo-5-(4-chloro-2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile (JLJ518), a non-nucleoside inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 1YR: (2E)-3-(3-bromo-5-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile(Non-covalent)

1YR.1: 16 residues within 4Å: Chain A: P.97, L.102, K.103, K.105, V.108, V.110, V.181, Y.183, Y.190, P.227, F.229, W.231, L.236, H.237, P.238, Y.320 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.102, A:K.105, A:V.110, A:Y.183, A:Y.190, A:Y.190, A:Y.190, A:F.229, A:F.229, A:W.231, A:L.236 Hydrogen bonds: A:K.105 pi-Stacking: A:W.231, A:W.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frey, K.M. et al., Structure-Based Evaluation of C5 Derivatives in the Catechol Diether Series Targeting HIV-1 Reverse Transcriptase. Chem.Biol.Drug Des. (2014)

Release Date

2013-12-25

Peptides

HIV-1 reverse transcriptase, p66 subunit: A
HIV-1 reverse transcriptase, p51 subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 reverse transcriptase, p66 subunit

HIV-1 reverse transcriptase, p51 subunit

Related Entries With Identical Sequence