4xuj.1 | SWISS-MODEL Template Library

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SMTL ID : 4xuj.1

Nucleosome core particle containing adducts from treatment with a thiomorpholine-substituted [(eta-6-p-cymene)Ru(3-hydroxy-2-pyridone)Cl] compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.18 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	8 residues within 4Å: Chain C: G.44, A.45, G.46, A.47 Chain D: T.90, S.91, R.92 Chain J: A.110 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.46, C:A.47, D:S.91, D:R.92
SO4.4:	7 residues within 4Å: Chain G: G.44, A.45, G.46, A.47 Chain H: T.90, S.91, R.92 5 PLIP interactions: 3 interactions with chain G, 2 interactions with chain H Hydrogen bonds: G:G.44, G:G.46, G:A.47, H:S.91, H:R.92
SO4.5:	4 residues within 4Å: Chain H: H.49, P.50, D.51, T.52 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:H.49, H:D.51, H:D.51, H:T.52 Salt bridges: H:H.49

3 x 4A6: [(1,2,3,4,5,6-eta)-1-methyl-4-(propan-2-yl)benzene]ruthenium(Non-covalent)

4A6.2:	4 residues within 4Å: Chain D: H.82 Chain G: L.33, Y.39 Chain H: N.67 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:L.33
4A6.6:	2 residues within 4Å: Chain H: E.105, H.109 2 PLIP interactions: 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:H.109, H₂O.1
4A6.7:	2 residues within 4Å: Chain C: Y.39 Chain H: H.82 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3:

1 residues within 4Å:

Chain E: D.77

1 PLIP interactions:

1 interactions with chain E

Metal complexes: E:D.77

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Hanif, M. et al., Contrasting Cytotoxicity and Reactivity of RuII-Arene Complexes of Morpholine vs Thiomorpholine Substituted 3-Hydroxy-2-pyridone Ligands. To Be Published

Release Date

2016-01-27

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

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NGLPV2D

Histone H3.2

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Histone H4

Histone H2A

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Histone H2B 1.1

Toggle Identical (DH)

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