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SMTL ID : 9p0w.1

Human carbonic anhydrase II in complex with TDP4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

4 residues within 4Å:

Chain A: H.94, H.96, H.119
Ligands: 01.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x 01: 3,3,3-trifluoro-2,2-dihydroxy-1-(4-methoxyphenyl)propan-1-one

01.2:

11 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:L.197
Hydrogen bonds: A:T.198, A:T.199, A:T.199
Water bridges: A:Q.92

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Pala, N. et al., Design, anticancer activity, and mechanistic evaluation of a novel class of selective human carbonic anhydrase IX inhibitors featuring a trifluorodihydroxypropanone pharmacophore. Eur.J.Med.Chem. (2025)

Release Date

2025-10-08

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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