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SMTL ID : 5ja4.1

Crystal structure of human TONSL and MCM2 HBDs binding to a histone H3-H4 tetramer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1:	7 residues within 4Å: Chain A: R.73, I.74 Chain E: G.46, E.49, D.50, L.53, R.75 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:R.75 Water bridges: E:R.75 Salt bridges: E:D.50, A:R.73
MES.4:	7 residues within 4Å: Chain A: G.46, E.49, D.50, L.53, R.75 Chain E: R.73, I.74 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:R.75 Water bridges: A:R.75 Salt bridges: A:D.50, E:R.73

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	6 residues within 4Å: Chain B: Q.27, E.52, R.55, G.56 Chain D: R.14, D.16 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:D.16, D:D.16, B:R.55
GOL.3:	4 residues within 4Å: Chain A: E.17 Chain B: L.22, D.24, N.25 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.24, B:D.24, B:N.25
GOL.5:	6 residues within 4Å: Chain F: Q.27, E.52, R.55, G.56 Chain H: R.14, D.16 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain F Hydrogen bonds: H:D.16, H:D.16, F:R.55
GOL.6:	4 residues within 4Å: Chain E: E.17 Chain F: L.22, D.24, N.25 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:D.24, F:D.24, F:D.24, F:N.25

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Saredi, G. et al., H4K20me0 marks post-replicative chromatin and recruits the TONSL-MMS22L DNA repair complex. Nature (2016)

Release Date

2016-06-15

Peptides

Histone H3.3: AE
Histone H4: BF
DNA replication licensing factor MCM2: CG
Tonsoku-like protein: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

B
B

F
B

C
C

G
C

D
D

H
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.3

Toggle Identical (AE)

Histone H4

Toggle Identical (BF)

DNA replication licensing factor MCM2

Toggle Identical (CG)

Tonsoku-like protein

Toggle Identical (DH)

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