SMTL ID : 5qpo.1

PanDDA analysis group deposition -- Crystal Structure of T. cruzi FPPS in complex with FMOPL000574a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52 Water bridges: A:R.53, A:R.53, A:R.53, A:E.90, A:Q.93, A:Q.93 Salt bridges: A:R.53 SO4.2: 3 residues within 4Å: Chain A: Q.23, H.143 Ligands: GQP.8 4 PLIP interactions: 4 interactions with chain A Water bridges: A:W.142, A:H.143, A:H.143 Salt bridges: A:H.143 SO4.5: 6 residues within 4Å: Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52 Water bridges: B:R.53, B:R.53, B:R.53, B:E.90, B:Q.93, B:Q.93 Salt bridges: B:R.53 SO4.6: 3 residues within 4Å: Chain B: Q.23, H.143 Ligands: GQP.4 3 PLIP interactions: 3 interactions with chain B Water bridges: B:W.142, B:H.143 Salt bridges: B:H.143

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: R.239, S.336, L.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.336 Salt bridges: A:R.239 ACT.7: 3 residues within 4Å: Chain B: R.239, S.336, L.337 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.336 Salt bridges: B:R.239

2 x GQP: 1-[(4-fluorophenyl)methyl]benzimidazole(Non-covalent)

GQP.4: 9 residues within 4Å: Chain A: K.160, V.161, F.212, L.216, E.238 Chain B: Q.23, K.27, Y.28 Ligands: SO4.6 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:K.27, B:Y.28, B:Y.28, A:K.160, A:F.212 pi-Cation interactions: A:K.160 GQP.8: 9 residues within 4Å: Chain A: Q.23, K.27, Y.28 Chain B: K.160, V.161, F.212, L.216, E.238 Ligands: SO4.2 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:K.160, B:F.212, A:K.27, A:Y.28, A:Y.28 pi-Cation interactions: B:K.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published

Release Date

2020-04-29

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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