SMTL ID : 5qpy.1

PanDDA analysis group deposition -- Crystal Structure of T. cruzi FPPS in complex with FMOPL000449a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52 Water bridges: A:R.53, A:R.53, A:R.53, A:R.53, A:E.90, A:Q.93 Salt bridges: A:R.53 SO4.2: 2 residues within 4Å: Chain A: Q.23, H.143 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.23 Salt bridges: A:H.143 SO4.7: 6 residues within 4Å: Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52 Water bridges: B:R.53, B:R.53, B:R.53, B:R.53, B:E.90, B:Q.93 Salt bridges: B:R.53 SO4.8: 2 residues within 4Å: Chain B: Q.23, H.143 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.23 Salt bridges: B:H.143

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: R.239, S.336, L.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.336 Salt bridges: A:R.239 ACT.9: 3 residues within 4Å: Chain B: R.239, S.336, L.337 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.336 Salt bridges: B:R.239

4 x ZN: ZINC ION(Non-covalent)

ZN.4: 3 residues within 4Å: Chain A: D.100, D.104, D.172 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.100, A:D.100, A:D.104, H2O.6 ZN.5: 3 residues within 4Å: Chain A: D.252, D.256, D.270 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.252, H2O.1, H2O.6, H2O.8, H2O.8 ZN.10: 3 residues within 4Å: Chain B: D.100, D.104, D.172 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.100, B:D.100, B:D.104, H2O.18 ZN.11: 3 residues within 4Å: Chain B: D.252, D.256, D.270 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.252, H2O.14, H2O.18, H2O.20, H2O.21

2 x JH1: 1-ethyl-N-[(4-fluorophenyl)methyl]-1H-pyrazole-4-carboxamide(Non-covalent)

JH1.6: 8 residues within 4Å: Chain A: P.199, Y.202, K.203, E.246, V.250, A.325, Y.326, E.329 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.199, A:Y.202, A:Y.202, A:K.203, A:V.250, A:A.325, A:Y.326 Water bridges: A:W.278 JH1.12: 8 residues within 4Å: Chain B: P.199, Y.202, K.203, E.246, V.250, A.325, Y.326, E.329 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:P.199, B:Y.202, B:Y.202, B:K.203, B:V.250, B:A.325, B:Y.326 Water bridges: B:W.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published

Release Date

2020-04-29

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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