SMTL ID : 6r08.1

T. cruzi FPPS in complex with 3-(carboxymethyl)-5,7-dichloro-1H-indole-2-carboxylic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

homo-dimer

Ligands

2 x GO1: 3-(carboxymethyl)-5,7-dichloro-1H-indole-2-carboxylic acid(Non-covalent)

GO1.1: 7 residues within 4Å: Chain A: V.254, F.258, Y.314, S.315, L.319, Q.320, F.323 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.254, A:F.258, A:L.319, A:Q.320 pi-Stacking: A:F.258 Halogen bonds: A:Y.314 GO1.5: 7 residues within 4Å: Chain B: V.254, F.258, Y.314, S.315, L.319, Q.320, F.323 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.254, B:F.258, B:L.319, B:Q.320 pi-Stacking: B:F.258 Halogen bonds: B:Y.314

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: D.104, Q.169 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.104, H2O.2 ZN.3: 2 residues within 4Å: Chain A: D.256, D.270 No protein-ligand interaction detected (PLIP) ZN.6: 2 residues within 4Å: Chain B: D.104, Q.169 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.104, H2O.15 ZN.7: 2 residues within 4Å: Chain B: D.256, D.270 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52, A:Q.93, A:R.110 Water bridges: A:R.53, A:R.53, A:R.53, A:E.90, A:Q.93 Salt bridges: A:R.53 SO4.8: 6 residues within 4Å: Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52, B:Q.93, B:R.110 Water bridges: B:R.53, B:R.53, B:R.53, B:E.90, B:Q.93 Salt bridges: B:R.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery. Thesis (2019)

Release Date

2020-04-01

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

Related Entries With Identical Sequence