SMTL ID : 6si5.1

T. cruzi FPPS in complex with 1-methyl-5-(4,5,6,7-tetrahydrothieno[3,2-c]pyridine-5-carbonyl)pyridin-2(1H)-one

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x LEQ: 5-(6,7-dihydro-4~{H}-thieno[3,2-c]pyridin-5-ylcarbonyl)-1-methyl-pyridin-2-one(Non-covalent)

LEQ.1: 10 residues within 4Å: Chain A: K.50, F.52, R.53, T.56, T.214, Y.215, F.248, K.358, T.359 Ligands: SO4.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.50, A:F.52, A:F.52, A:F.52, A:Y.215, A:F.248 Hydrogen bonds: A:K.50, A:R.53, A:R.53 LEQ.4: 10 residues within 4Å: Chain B: K.50, F.52, R.53, T.56, T.214, Y.215, F.248, K.358, T.359 Ligands: SO4.5 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:K.50, B:F.52, B:F.52, B:F.52, B:Y.215, B:F.248 Hydrogen bonds: B:K.50, B:R.53, B:R.53

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: G.49, K.50, Y.51, R.53, Q.93 Ligands: LEQ.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52, A:Q.93 Water bridges: A:R.53 Salt bridges: A:R.53 SO4.3: 3 residues within 4Å: Chain A: Q.23, K.27, H.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.23 Water bridges: A:K.27 Salt bridges: A:H.143 SO4.5: 6 residues within 4Å: Chain B: G.49, K.50, Y.51, R.53, Q.93 Ligands: LEQ.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52, B:Q.93 Water bridges: B:R.53 Salt bridges: B:R.53 SO4.6: 3 residues within 4Å: Chain B: Q.23, K.27, H.143 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.23 Water bridges: B:K.27 Salt bridges: B:H.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery. Thesis (2019)

Release Date

2020-08-26

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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