SMTL ID : 5qq9.1

PanDDA analysis group deposition -- Crystal Structure of T. cruzi FPPS in complex with FMOOA000567a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52 Water bridges: A:G.49, A:R.53, A:R.53, A:R.53, A:E.90, A:Q.93 Salt bridges: A:R.53 SO4.2: 2 residues within 4Å: Chain A: Q.23, H.143 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Water bridges: B:K.160, B:K.160, A:H.143 Salt bridges: B:K.160, A:K.27, A:H.143 SO4.7: 6 residues within 4Å: Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52 Water bridges: B:G.49, B:R.53, B:R.53, B:R.53, B:E.90, B:Q.93 Salt bridges: B:R.53 SO4.8: 2 residues within 4Å: Chain B: Q.23, H.143 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Water bridges: A:K.160, A:K.160, B:H.143 Salt bridges: A:K.160, B:K.27, B:H.143

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: R.239, S.336, L.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.336 Salt bridges: A:R.239 ACT.9: 3 residues within 4Å: Chain B: R.239, S.336, L.337 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.336 Salt bridges: B:R.239

4 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: D.104, Q.169 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.104, H2O.1 ZN.5: 2 residues within 4Å: Chain A: D.252, D.256 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.252, H2O.2, H2O.3, H2O.3, H2O.9 ZN.10: 2 residues within 4Å: Chain B: D.104, Q.169 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.104, H2O.13 ZN.11: 2 residues within 4Å: Chain B: D.252, D.256 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.252, H2O.14, H2O.15, H2O.16, H2O.21

2 x M0D: 2-[(2R,5R,6S)-5-hydroxy-1,2,4,5,6,7-hexahydro-3H-2,6-methanoazocino[5,4-b]indol-3-yl]acetamide(Non-covalent)

M0D.6: 9 residues within 4Å: Chain A: M.176, C.177, Q.188, P.189, M.190, E.272, D.273, A.274, G.300 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Q.188, A:M.190, A:A.274 Water bridges: A:D.273, A:K.302, B:Q.124, B:Q.124 M0D.12: 9 residues within 4Å: Chain B: M.176, C.177, Q.188, P.189, M.190, E.272, D.273, A.274, G.300 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Q.188, B:M.190, B:A.274 Water bridges: B:D.273, B:K.302, A:Q.124, A:Q.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published

Release Date

2020-04-29

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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