SMTL ID : 6r09.1

T. cruzi FPPS in complex with 2-(4-((1H-indol-3-yl)methyl)piperazin-1-yl)benzo[d]thiazole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

homo-dimer

Ligands

2 x JMK: 2-[4-(1~{H}-indol-3-ylmethyl)piperazin-1-yl]-1,3-benzothiazole(Non-covalent)

JMK.1: 7 residues within 4Å: Chain A: V.254, F.258, K.311, S.315, L.319, Q.320, F.323 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.254, A:K.311, A:K.311, A:L.319, A:F.323 pi-Stacking: A:F.258, A:F.258 JMK.6: 7 residues within 4Å: Chain B: V.254, F.258, K.311, S.315, L.319, Q.320, F.323 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.254, B:K.311, B:K.311, B:L.319, B:F.323 pi-Stacking: B:F.258, B:F.258

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: D.252 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.252, H2O.1, H2O.1, H2O.2, H2O.2 ZN.3: 3 residues within 4Å: Chain A: D.100, D.104, Q.169 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.104, H2O.1 ZN.7: 1 residues within 4Å: Chain B: D.252 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.252, H2O.11, H2O.11, H2O.12, H2O.12 ZN.8: 3 residues within 4Å: Chain B: D.100, D.104, Q.169 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.104, H2O.12

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 7 residues within 4Å: Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93, R.110 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52, A:Q.93, A:R.110 Water bridges: A:R.53, A:R.53, A:R.53, A:R.53, A:E.90 Salt bridges: A:R.53 SO4.5: 2 residues within 4Å: Chain A: Q.23, H.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.23 Water bridges: A:H.143 Salt bridges: A:H.143 SO4.9: 7 residues within 4Å: Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93, R.110 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52, B:Q.93, B:R.110 Water bridges: B:R.53, B:R.53, B:R.53, B:R.53, B:E.90 Salt bridges: B:R.53 SO4.10: 2 residues within 4Å: Chain B: Q.23, H.143 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.23 Water bridges: B:H.143 Salt bridges: B:H.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery. Thesis (2019)

Release Date

2020-04-01

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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