- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
ZN.4: 2 residues within 4Å:- Chain A: D.100, D.104
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.100, A:D.104, H2O.2, H2O.5, H2O.5
ZN.5: 2 residues within 4Å:- Chain A: D.252, D.270
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.252, H2O.1, H2O.2, H2O.6
ZN.6: 3 residues within 4Å:- Chain A: E.238
- Ligands: LXA.8, LXA.9
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.238, A:E.238, H2O.10
ZN.13: 2 residues within 4Å:- Chain B: D.100, D.104
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.100, B:D.104, H2O.14, H2O.17, H2O.18
ZN.14: 2 residues within 4Å:- Chain B: D.252, D.270
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.252, H2O.13, H2O.15, H2O.18
ZN.15: 3 residues within 4Å:- Chain B: E.238
- Ligands: LXA.17, LXA.18
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.238, B:E.238, H2O.22
- 6 x LXA: ~{N}-(1~{H}-benzimidazol-2-ylmethyl)-2-methoxy-ethanamide(Non-covalent)
LXA.7: 2 residues within 4Å:- Chain A: Y.116, R.117
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:R.117, A:R.117
- Hydrogen bonds: A:R.117
- Water bridges: A:Y.116, A:R.117, A:T.123
- pi-Stacking: A:Y.116
LXA.8: 12 residues within 4Å:- Chain A: L.157, K.160, V.161, K.207, Y.208, F.212, E.238
- Chain B: S.26, K.27, E.29
- Ligands: ZN.6, LXA.9
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.157, A:K.160, A:V.161, A:F.212
- Hydrogen bonds: A:K.207, B:K.27
- Water bridges: A:Y.208, A:Y.208
LXA.9: 9 residues within 4Å:- Chain A: L.157, K.160, V.220, M.234, E.238
- Chain B: K.27, Y.28
- Ligands: ZN.6, LXA.8
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.157, A:V.220
- Hydrogen bonds: A:K.160
- Water bridges: A:E.238
LXA.16: 2 residues within 4Å:- Chain B: Y.116, R.117
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:R.117, B:R.117
- Hydrogen bonds: B:R.117
- Water bridges: B:Y.116, B:R.117, B:T.123, B:T.123
- pi-Stacking: B:Y.116
LXA.17: 12 residues within 4Å:- Chain A: S.26, K.27, E.29
- Chain B: L.157, K.160, V.161, K.207, Y.208, F.212, E.238
- Ligands: ZN.15, LXA.18
7 PLIP interactions:1 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:K.27, B:K.207, B:E.238
- Hydrophobic interactions: B:L.157, B:K.160, B:V.161, B:F.212
LXA.18: 9 residues within 4Å:- Chain A: K.27, Y.28
- Chain B: L.157, K.160, V.220, M.234, E.238
- Ligands: ZN.15, LXA.17
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.157, B:V.220
- Hydrogen bonds: B:K.160
- Water bridges: B:E.238, B:E.238
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published
- Release Date
- 2020-04-29
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x LXA: ~{N}-(1~{H}-benzimidazol-2-ylmethyl)-2-methoxy-ethanamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published
- Release Date
- 2020-04-29
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A